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The map label for this gene is yccZ [C]

Identifier: 119944207

GI number: 119944207

Start: 541492

End: 542100

Strand: Reverse

Name: yccZ [C]

Synonym: Ping_0428

Alternate gene names: 119944207

Gene position: 542100-541492 (Counterclockwise)

Preceding gene: 119944208

Following gene: 119944206

Centisome position: 11.89

GC content: 40.72

Gene sequence:

>609_bases
ATGATAAAAACTTTACTACTTACTTTCGCCATTTACATGCTGGCAAGTTGCTCTTCAACAGAACTCCTTCAGCAGATGGA
TTCTAAGGAGATCATAACGGCACCTGAATACAAAATAGGTGTAGGCGATCAGTTATCTATTAATGTTTGGAAAAATCCAG
AATTATCATTAAGCGTTACCGTCCGCCCCGATGGAAAAATATCAGTTCCACTCGTTGGCGATGCTCAAGCGGTCGGTCTT
TCTGCAGAGGCGCTAGCGGCAGAGCTTAACAATAACCTCAAAAAGTTTATCCGAAGTCCAGAAGTCACCGTTATTGTAAG
CTCTGCGATGAGTGCCGAGTTCCTATCTCGAGTACGTATCACAGGCGCTGTGCAAACACCTCTATCTATTCCCTATAGAG
AAGGAATGACAGTACTCGATTTAGTCCTACAGGCTGGTGGGTTAAACCCTTTTTCTAATGGTGATAACGCAATTTTATAC
CGAAAAACTGATAGCGGAATTAAACGTTATTCAATAAAACTTAAGCGCATAATAAAACAAGGCGATATATCGACTAATTA
CGAGTTAAGGCCATCAGATATCCTAATTGTCCCAGAGAGTATATTTTAA

Upstream 100 bases:

>100_bases
TCAATTTATTTACCTTTGAATGGCACTAAAAAAGAAATGAACTACGCTTAAAATCATTAACTTAGAGATAAACATTTGTT
AATAGACTTTAGAGGATAAA

Downstream 100 bases:

>100_bases
TCATGGAAATTAATGAAATATTTAAATACATAGCAGCGGCATGGCAAGAAGTATGCCTAAGAAAATTCAAGGCAGCATTA
CTTGTTACTGTGATTAGTTT

Product: polysaccharide export protein

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MIKTLLLTFAIYMLASCSSTELLQQMDSKEIITAPEYKIGVGDQLSINVWKNPELSLSVTVRPDGKISVPLVGDAQAVGL
SAEALAAELNNNLKKFIRSPEVTVIVSSAMSAEFLSRVRITGAVQTPLSIPYREGMTVLDLVLQAGGLNPFSNGDNAILY
RKTDSGIKRYSIKLKRIIKQGDISTNYELRPSDILIVPESIF

Sequences:

>Translated_202_residues
MIKTLLLTFAIYMLASCSSTELLQQMDSKEIITAPEYKIGVGDQLSINVWKNPELSLSVTVRPDGKISVPLVGDAQAVGL
SAEALAAELNNNLKKFIRSPEVTVIVSSAMSAEFLSRVRITGAVQTPLSIPYREGMTVLDLVLQAGGLNPFSNGDNAILY
RKTDSGIKRYSIKLKRIIKQGDISTNYELRPSDILIVPESIF
>Mature_202_residues
MIKTLLLTFAIYMLASCSSTELLQQMDSKEIITAPEYKIGVGDQLSINVWKNPELSLSVTVRPDGKISVPLVGDAQAVGL
SAEALAAELNNNLKKFIRSPEVTVIVSSAMSAEFLSRVRITGAVQTPLSIPYREGMTVLDLVLQAGGLNPFSNGDNAILY
RKTDSGIKRYSIKLKRIIKQGDISTNYELRPSDILIVPESIF

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=199, Percent_Identity=29.6482412060301, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788376, Length=181, Percent_Identity=28.7292817679558, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 22060; Mature: 22060

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTLLLTFAIYMLASCSSTELLQQMDSKEIITAPEYKIGVGDQLSINVWKNPELSLSVT
CHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEECCCEEECCCCEEEEEEECCCCEEEEEE
VRPDGKISVPLVGDAQAVGLSAEALAAELNNNLKKFIRSPEVTVIVSSAMSAEFLSRVRI
ECCCCEEEEEEECCCHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHE
TGAVQTPLSIPYREGMTVLDLVLQAGGLNPFSNGDNAILYRKTDSGIKRYSIKLKRIIKQ
EEEECCCCCCCHHCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
GDISTNYELRPSDILIVPESIF
CCCCCCCEECCCCEEEECCCCC
>Mature Secondary Structure
MIKTLLLTFAIYMLASCSSTELLQQMDSKEIITAPEYKIGVGDQLSINVWKNPELSLSVT
CHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEECCCEEECCCCEEEEEEECCCCEEEEEE
VRPDGKISVPLVGDAQAVGLSAEALAAELNNNLKKFIRSPEVTVIVSSAMSAEFLSRVRI
ECCCCEEEEEEECCCHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHE
TGAVQTPLSIPYREGMTVLDLVLQAGGLNPFSNGDNAILYRKTDSGIKRYSIKLKRIIKQ
EEEECCCCCCCHHCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
GDISTNYELRPSDILIVPESIF
CCCCCCCEECCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896702 [H]