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The map label for this gene is cpsD [H]

Identifier: 119944205

GI number: 119944205

Start: 539175

End: 539927

Strand: Reverse

Name: cpsD [H]

Synonym: Ping_0426

Alternate gene names: 119944205

Gene position: 539927-539175 (Counterclockwise)

Preceding gene: 119944206

Following gene: 119944204

Centisome position: 11.84

GC content: 36.12

Gene sequence:

>753_bases
ATGACAGTTATGCCTTTAGAAAAACAGATCACTGAGAGAAATCATAACGCACTGAATATCTCCGATGATAGTCGAAAACA
AATTCGAGAAATGAATGATGACTGGTTATTAACGTCCGATGAACTTGACGCATTAAAAATAATTTATCCCGGTTGCGGGG
ATGAAAAATCACTCAATAATTATCGTGAATTACGCACTAAAATATTAAAAAAGGCTAATAACAAAAATTTTGTCTGCATG
CTTTCTAGCACTAACCAAGGCTCGGGTACAACGCATGTTGCTGTGAATTTAGCCGCTAGTATTGCCTTGGATCATAGAAA
AACGGCATTAATTATTGATTGCAATAATTACACTCCTAGTTTAGATAACTACCTTAAAGAAAAACCAAAATTTGGTTTGT
CTAATTTTCTTGAGGAAGATACCCAGGAAATAGAGGATATTATCTATCCATCAGGCATCCGGCGGATAAGAATTATTCCA
GCTGGATCTAAAACTGAACACGCAGCAGAAAACTTTTCATCAGAGAAGATGGAAAAATTCATAGAGATGGCCAAAAAACG
CTATCCAGATCGTTTTATTATTCTCGATACGCCCCCTATTGGATATTATGCTGAAAGCCAGATTTTAGCGTCAATTTGCG
ATATGGCTATTTTAGTAGTGCGCTATGGGCAGACAAGTGAATCACAAATTCAGACAGGCATTGAGCTAATTAGTAACGAT
AAACTTGCAGGCATTATTCTTAACAATAAATGA

Upstream 100 bases:

>100_bases
TTGTAACTGTTTATGTCGGCATTGCCATTAGTCATCGCTATGACTACCCAATATCAGAGCTATTTACGCCACTGTATTCT
CTATTAATGGAGCGGATAAG

Downstream 100 bases:

>100_bases
GATACTTATGAAGATTAACAAAATATCTACTCAATCATGTCCAAGTATCTTTTTTTTTGCTCTCTTATTTCAAACTCATG
CTGCAGCATCAACAACCGAT

Product: putative polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MTVMPLEKQITERNHNALNISDDSRKQIREMNDDWLLTSDELDALKIIYPGCGDEKSLNNYRELRTKILKKANNKNFVCM
LSSTNQGSGTTHVAVNLAASIALDHRKTALIIDCNNYTPSLDNYLKEKPKFGLSNFLEEDTQEIEDIIYPSGIRRIRIIP
AGSKTEHAAENFSSEKMEKFIEMAKKRYPDRFIILDTPPIGYYAESQILASICDMAILVVRYGQTSESQIQTGIELISND
KLAGIILNNK

Sequences:

>Translated_250_residues
MTVMPLEKQITERNHNALNISDDSRKQIREMNDDWLLTSDELDALKIIYPGCGDEKSLNNYRELRTKILKKANNKNFVCM
LSSTNQGSGTTHVAVNLAASIALDHRKTALIIDCNNYTPSLDNYLKEKPKFGLSNFLEEDTQEIEDIIYPSGIRRIRIIP
AGSKTEHAAENFSSEKMEKFIEMAKKRYPDRFIILDTPPIGYYAESQILASICDMAILVVRYGQTSESQIQTGIELISND
KLAGIILNNK
>Mature_249_residues
TVMPLEKQITERNHNALNISDDSRKQIREMNDDWLLTSDELDALKIIYPGCGDEKSLNNYRELRTKILKKANNKNFVCML
SSTNQGSGTTHVAVNLAASIALDHRKTALIIDCNNYTPSLDNYLKEKPKFGLSNFLEEDTQEIEDIIYPSGIRRIRIIPA
GSKTEHAAENFSSEKMEKFIEMAKKRYPDRFIILDTPPIGYYAESQILASICDMAILVVRYGQTSESQIQTGIELISNDK
LAGIILNNK

Specific function: Involved in the regulation of capsular polysaccharide biosynthesis. Autophosphorylation of CpsD attenuates its activity and reduces the level of encapsulation. May be part of a complex that directs the coordinated polymerization and export to the cell sur

COG id: COG0489

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Inner membrane (Probable) [C]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpsD/CapB family [H]

Homologues:

Organism=Escherichia coli, GI87082032, Length=191, Percent_Identity=26.1780104712042, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR005702 [H]

Pfam domain/function: PF01656 CbiA [H]

EC number: =2.7.10.2 [H]

Molecular weight: Translated: 28308; Mature: 28176

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVMPLEKQITERNHNALNISDDSRKQIREMNDDWLLTSDELDALKIIYPGCGDEKSLNN
CCCCCCHHHHHHCCCCEEECCCHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCHHHHH
YRELRTKILKKANNKNFVCMLSSTNQGSGTTHVAVNLAASIALDHRKTALIIDCNNYTPS
HHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEHHHHEECCCCEEEEEECCCCCCH
LDNYLKEKPKFGLSNFLEEDTQEIEDIIYPSGIRRIRIIPAGSKTEHAAENFSSEKMEKF
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHCCCHHHHHHH
IEMAKKRYPDRFIILDTPPIGYYAESQILASICDMAILVVRYGQTSESQIQTGIELISND
HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
KLAGIILNNK
CEEEEEECCC
>Mature Secondary Structure 
TVMPLEKQITERNHNALNISDDSRKQIREMNDDWLLTSDELDALKIIYPGCGDEKSLNN
CCCCCHHHHHHCCCCEEECCCHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCHHHHH
YRELRTKILKKANNKNFVCMLSSTNQGSGTTHVAVNLAASIALDHRKTALIIDCNNYTPS
HHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEHHHHEECCCCEEEEEECCCCCCH
LDNYLKEKPKFGLSNFLEEDTQEIEDIIYPSGIRRIRIIPAGSKTEHAAENFSSEKMEKF
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHCCCHHHHHHH
IEMAKKRYPDRFIILDTPPIGYYAESQILASICDMAILVVRYGQTSESQIQTGIELISND
HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
KLAGIILNNK
CEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10464185; 11027683 [H]