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The map label for this gene is yjgF [C]

Identifier: 119944196

GI number: 119944196

Start: 527278

End: 527709

Strand: Reverse

Name: yjgF [C]

Synonym: Ping_0416

Alternate gene names: 119944196

Gene position: 527709-527278 (Counterclockwise)

Preceding gene: 119944197

Following gene: 119944195

Centisome position: 11.57

GC content: 41.67

Gene sequence:

>432_bases
ATGAAATCAAATAAGAATGCAGATATGCAAGAACCAAAAAACAAAGTGTCCCCCATCTTTCATCTGATTGAAGCGGGCCC
GAAACCAGTAGCACCATTTAGCCATGCAGTTGAAGTGGGTGAAACTATCTTTGTCACAGGGCAAATGCCTGATACGCCAA
CAAATCCAGGTGTACTTCCTGAAGGGGTTGAGGCACAAACGGACAATGTAATGAATAATCTCAACATCATATTAAAGGCG
CTTGATTTAGGATTGGAGAATATTGTGTCAGTGCGCGTATTTTTGAAGGAGTTTAAACGAGACTATCAAGCCTTTAATGA
TACTTATCGAAGCTATTTTCCAGAGCATCGCCTGCCAGCACGAACCTGTATTGGTACGACAGGCTTGGCTTATGATGCTC
TTGTAGAAATTGATTTGATTGCGTGTCGTTAA

Upstream 100 bases:

>100_bases
GTCTCGGAACTTACACTAACTTGCTCGATGATGATCATAAAAAATATCATTAGGTAATCTAAAACTTTTTTAATCTTTCT
AGCTTATAGGATCCATACAG

Downstream 100 bases:

>100_bases
TGGGTTTGAATTTTTACTGTAAGAAAACATAGAGGAATTAATTATGATATTAAACAAAATCTTAAAAATCACTGGGGGAG
CATTCATATTGTCATGTTCG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MKSNKNADMQEPKNKVSPIFHLIEAGPKPVAPFSHAVEVGETIFVTGQMPDTPTNPGVLPEGVEAQTDNVMNNLNIILKA
LDLGLENIVSVRVFLKEFKRDYQAFNDTYRSYFPEHRLPARTCIGTTGLAYDALVEIDLIACR

Sequences:

>Translated_143_residues
MKSNKNADMQEPKNKVSPIFHLIEAGPKPVAPFSHAVEVGETIFVTGQMPDTPTNPGVLPEGVEAQTDNVMNNLNIILKA
LDLGLENIVSVRVFLKEFKRDYQAFNDTYRSYFPEHRLPARTCIGTTGLAYDALVEIDLIACR
>Mature_143_residues
MKSNKNADMQEPKNKVSPIFHLIEAGPKPVAPFSHAVEVGETIFVTGQMPDTPTNPGVLPEGVEAQTDNVMNNLNIILKA
LDLGLENIVSVRVFLKEFKRDYQAFNDTYRSYFPEHRLPARTCIGTTGLAYDALVEIDLIACR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87082396, Length=122, Percent_Identity=34.4262295081967, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI87082213, Length=122, Percent_Identity=29.5081967213115, Blast_Score=71, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71982068, Length=116, Percent_Identity=35.3448275862069, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=116, Percent_Identity=35.3448275862069, Blast_Score=66, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71982075, Length=116, Percent_Identity=35.3448275862069, Blast_Score=66, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6322138, Length=117, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6320899, Length=106, Percent_Identity=33.0188679245283, Blast_Score=61, Evalue=7e-11,
Organism=Drosophila melanogaster, GI19921376, Length=116, Percent_Identity=36.2068965517241, Blast_Score=76, Evalue=6e-15,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 15889; Mature: 15889

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNKNADMQEPKNKVSPIFHLIEAGPKPVAPFSHAVEVGETIFVTGQMPDTPTNPGVLP
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCC
EGVEAQTDNVMNNLNIILKALDLGLENIVSVRVFLKEFKRDYQAFNDTYRSYFPEHRLPA
CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
RTCIGTTGLAYDALVEIDLIACR
HHHHCCCCHHHHHHHHHEEEECC
>Mature Secondary Structure
MKSNKNADMQEPKNKVSPIFHLIEAGPKPVAPFSHAVEVGETIFVTGQMPDTPTNPGVLP
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCC
EGVEAQTDNVMNNLNIILKALDLGLENIVSVRVFLKEFKRDYQAFNDTYRSYFPEHRLPA
CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
RTCIGTTGLAYDALVEIDLIACR
HHHHCCCCHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]