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The map label for this gene is yibD [C]

Identifier: 119944113

GI number: 119944113

Start: 428118

End: 428891

Strand: Reverse

Name: yibD [C]

Synonym: Ping_0328

Alternate gene names: 119944113

Gene position: 428891-428118 (Counterclockwise)

Preceding gene: 119944114

Following gene: 119944111

Centisome position: 9.41

GC content: 40.44

Gene sequence:

>774_bases
ATGTCAAAAAATAGTATCAGCGCCATTATCATCACCAAAAATGAGCAAAATAACCTACCAGCTTGTTTAGACTCGCTACG
CTGGGTTGATGAACTCATTATTGTCGATTCAGGCAGTACAGATAGGACTGAAGCGGTCGCTAAGCGTTACGGGGCTAAAT
TTTATTCACATACAAACTGGCAAGGCTTTGGTAAACAAAAGCAACTTGCGCAAAATTATGCCACCAGCAAATGGATTATC
GCCATTGATGCAGATGAAGTTGTTTCTCCTGAATTACAAAGTGCGATTGAGCAAAAAATAACCACTTCCGATGAAAATAC
AGTATTCAAAATACAGCGTAAGACTTGGGTATTTGGACGATTTTTAGCGCACTCCGGCTGGATTGATAAAATTATCCGCG
TCTATCCAAAACAGCTTGCTCATTATAACAATGCCCTAGTGCACGAAAAAATAGTAACAGAAAACCATGTTAAAATTTCC
CAACTGCAGGGGGATCTTTTCCACTATTCATACGGTGATATGGAAAATTACCTGGTTAAGTCAGCAAGTTATGGAAAAGC
ATGGGCTGACGAGAGAGAAAAAAGAGGAAAAAAAGCAAGCCTGACCCAAGGCTTCACCCATGCACTGGGCTGTTTTGTGA
AAATGTATCTGGTAAAACGCGGCTTTTTAGACGGTAAACAGGGGTTGCTGATTGCCATACTTTCAGCACATTCAACCTTT
ATAAAGTACGCTGATTTATGGATAAGAGAGAATGACAGCCGCGCCAAAAAATAA

Upstream 100 bases:

>100_bases
TGGCGGGCACGCGTAAAAGATGAAAATGCGATGCAGAAAATAGCCATAAAAGTGGTGATCACTATGTTTGATAACCTTTG
CCAAAAACAGGAATAAATCA

Downstream 100 bases:

>100_bases
CAGTTAAAAGGAAATAGGACATAACTCCCCTATTATTTACAATGTGCCTTAAAAATTATTTTTTTCTAAAAAAGACAACA
AGTTTTGCATCACCAAATTA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSKNSISAIIITKNEQNNLPACLDSLRWVDELIIVDSGSTDRTEAVAKRYGAKFYSHTNWQGFGKQKQLAQNYATSKWII
AIDADEVVSPELQSAIEQKITTSDENTVFKIQRKTWVFGRFLAHSGWIDKIIRVYPKQLAHYNNALVHEKIVTENHVKIS
QLQGDLFHYSYGDMENYLVKSASYGKAWADEREKRGKKASLTQGFTHALGCFVKMYLVKRGFLDGKQGLLIAILSAHSTF
IKYADLWIRENDSRAKK

Sequences:

>Translated_257_residues
MSKNSISAIIITKNEQNNLPACLDSLRWVDELIIVDSGSTDRTEAVAKRYGAKFYSHTNWQGFGKQKQLAQNYATSKWII
AIDADEVVSPELQSAIEQKITTSDENTVFKIQRKTWVFGRFLAHSGWIDKIIRVYPKQLAHYNNALVHEKIVTENHVKIS
QLQGDLFHYSYGDMENYLVKSASYGKAWADEREKRGKKASLTQGFTHALGCFVKMYLVKRGFLDGKQGLLIAILSAHSTF
IKYADLWIRENDSRAKK
>Mature_256_residues
SKNSISAIIITKNEQNNLPACLDSLRWVDELIIVDSGSTDRTEAVAKRYGAKFYSHTNWQGFGKQKQLAQNYATSKWIIA
IDADEVVSPELQSAIEQKITTSDENTVFKIQRKTWVFGRFLAHSGWIDKIIRVYPKQLAHYNNALVHEKIVTENHVKISQ
LQGDLFHYSYGDMENYLVKSASYGKAWADEREKRGKKASLTQGFTHALGCFVKMYLVKRGFLDGKQGLLIAILSAHSTFI
KYADLWIRENDSRAKK

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 29327; Mature: 29196

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNSISAIIITKNEQNNLPACLDSLRWVDELIIVDSGSTDRTEAVAKRYGAKFYSHTNW
CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCHHHHCCCCC
QGFGKQKQLAQNYATSKWIIAIDADEVVSPELQSAIEQKITTSDENTVFKIQRKTWVFGR
CCCCHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHHCCCCCCCEEEEEECHHHHHHH
FLAHSGWIDKIIRVYPKQLAHYNNALVHEKIVTENHVKISQLQGDLFHYSYGDMENYLVK
HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEHHHHCCCHHEECCCCHHHHHHH
SASYGKAWADEREKRGKKASLTQGFTHALGCFVKMYLVKRGFLDGKQGLLIAILSAHSTF
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHH
IKYADLWIRENDSRAKK
HHHHHHEEEECCCCCCC
>Mature Secondary Structure 
SKNSISAIIITKNEQNNLPACLDSLRWVDELIIVDSGSTDRTEAVAKRYGAKFYSHTNW
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCHHHHCCCCC
QGFGKQKQLAQNYATSKWIIAIDADEVVSPELQSAIEQKITTSDENTVFKIQRKTWVFGR
CCCCHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHHCCCCCCCEEEEEECHHHHHHH
FLAHSGWIDKIIRVYPKQLAHYNNALVHEKIVTENHVKISQLQGDLFHYSYGDMENYLVK
HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEHHHHCCCHHEECCCCHHHHHHH
SASYGKAWADEREKRGKKASLTQGFTHALGCFVKMYLVKRGFLDGKQGLLIAILSAHSTF
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHH
IKYADLWIRENDSRAKK
HHHHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]