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The map label for this gene is ygiM [H]

Identifier: 119943966

GI number: 119943966

Start: 227769

End: 228338

Strand: Reverse

Name: ygiM [H]

Synonym: Ping_0179

Alternate gene names: 119943966

Gene position: 228338-227769 (Counterclockwise)

Preceding gene: 119943967

Following gene: 119943963

Centisome position: 5.01

GC content: 39.65

Gene sequence:

>570_bases
ATGCTGTGCATGAATGCGACTGCAGAAACCCGCTATGTGAGTGATGATATTTTCATTTATATGCATTCGGGACCAAGCCG
GGAATATCGTATTATCGGCACACTTGACGTGGGCAGTCCGGTCACAACTTTAACATATAATAAAAAGACAGGTTTTTATC
AAGTAAAAACTGCTAATGGTAAAACCGCCTGGGTAAAAGGCGATCAGTTACAAACGACTTTACCAGCAAAAAATTTGCTA
CCTGCAATCCAAAAAGAGCTCCAAGAAGCACAAATAAAACTACAAAATATTGATCAGAAAAACAGTGAGATATTGAATCA
ACAAAAGCAATCAATCATTGATAAAGACAACTTGATCGCAGCGCTAGAGAATGAGAAAAACAGCTTGCAGGAAAACATCA
TCGAGCTTAAAGCCACTAATCTGGAACTCGACTTGTTGCAGGATACCAAGGACGAACGGGTTAAAATGGAATGGATGTTG
TATGGAGGCAGTGTGCTATTTTTTGGATTGCTGTGTGGTTTGCTGATCCCTTCGTTACCACGCCGTAAGAAAAACAACAA
TAATTGGTAA

Upstream 100 bases:

>100_bases
ATTGATCTCTTCATTAATTCTTTTGATATAAATTTTTACTTTAATAAATAGGATCCTGAAATTGAAAATATTCATCTATA
TTACCACTGTTATTTCGCTG

Downstream 100 bases:

>100_bases
GACTGTATACCCAAACTGCTTGAAAATGGATCTTTAAGCCGTTTGGGTCGCACTATCTGTTAACCTTCCAATCAGTTAAT
GACTCTAAACTAAAACTTTG

Product: SH3 type 3 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MLCMNATAETRYVSDDIFIYMHSGPSREYRIIGTLDVGSPVTTLTYNKKTGFYQVKTANGKTAWVKGDQLQTTLPAKNLL
PAIQKELQEAQIKLQNIDQKNSEILNQQKQSIIDKDNLIAALENEKNSLQENIIELKATNLELDLLQDTKDERVKMEWML
YGGSVLFFGLLCGLLIPSLPRRKKNNNNW

Sequences:

>Translated_189_residues
MLCMNATAETRYVSDDIFIYMHSGPSREYRIIGTLDVGSPVTTLTYNKKTGFYQVKTANGKTAWVKGDQLQTTLPAKNLL
PAIQKELQEAQIKLQNIDQKNSEILNQQKQSIIDKDNLIAALENEKNSLQENIIELKATNLELDLLQDTKDERVKMEWML
YGGSVLFFGLLCGLLIPSLPRRKKNNNNW
>Mature_189_residues
MLCMNATAETRYVSDDIFIYMHSGPSREYRIIGTLDVGSPVTTLTYNKKTGFYQVKTANGKTAWVKGDQLQTTLPAKNLL
PAIQKELQEAQIKLQNIDQKNSEILNQQKQSIIDKDNLIAALENEKNSLQENIIELKATNLELDLLQDTKDERVKMEWML
YGGSVLFFGLLCGLLIPSLPRRKKNNNNW

Specific function: Unknown

COG id: COG3103

COG function: function code T; SH3 domain protein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1605 [H]

Homologues:

Organism=Escherichia coli, GI1789435, Length=198, Percent_Identity=33.8383838383838, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003646
- InterPro:   IPR013247
- InterPro:   IPR016476 [H]

Pfam domain/function: PF08239 SH3_3 [H]

EC number: NA

Molecular weight: Translated: 21521; Mature: 21521

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCMNATAETRYVSDDIFIYMHSGPSREYRIIGTLDVGSPVTTLTYNKKTGFYQVKTANG
CEECCCCCCCEEECCEEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCCCEEEEEECCC
KTAWVKGDQLQTTLPAKNLLPAIQKELQEAQIKLQNIDQKNSEILNQQKQSIIDKDNLIA
CEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEE
ALENEKNSLQENIIELKATNLELDLLQDTKDERVKMEWMLYGGSVLFFGLLCGLLIPSLP
EECCCHHHHHHHHHHEEECCEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCC
RRKKNNNNW
CCCCCCCCC
>Mature Secondary Structure
MLCMNATAETRYVSDDIFIYMHSGPSREYRIIGTLDVGSPVTTLTYNKKTGFYQVKTANG
CEECCCCCCCEEECCEEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCCCEEEEEECCC
KTAWVKGDQLQTTLPAKNLLPAIQKELQEAQIKLQNIDQKNSEILNQQKQSIIDKDNLIA
CEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEE
ALENEKNSLQENIIELKATNLELDLLQDTKDERVKMEWMLYGGSVLFFGLLCGLLIPSLP
EECCCHHHHHHHHHHEEECCEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCC
RRKKNNNNW
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]