| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
Click here to switch to the map view.
The map label for this gene is irgA2 [H]
Identifier: 119900141
GI number: 119900141
Start: 4220373
End: 4222526
Strand: Direct
Name: irgA2 [H]
Synonym: azo3852
Alternate gene names: 119900141
Gene position: 4220373-4222526 (Clockwise)
Preceding gene: 119900137
Following gene: 119900142
Centisome position: 96.44
GC content: 67.97
Gene sequence:
>2154_bases ATGCAGCCAGCGGCCGCTCTCCGCTCCTGCCCGGCACGCGTTCCGGGCCAGTCCGTTCCTGCCCGCGCGCGCCTCGCGGG CGCGCTTTCCATGCTGTTCGGCGTGCTGCCGGGCGCCGCGCTGGCGAGCGAGGACCTGTTCTTCAGCGAACTGCCCATCG TCGCCACCGTCAGCCGGCTGCCGCAGCGGCTGGCCGACGCCTCGGCGTCGGTCACCGTGATCGACCGCGACATGATCAAG GCCAGCGGCGCGCGCGACCTCAACGACGTGTTCCGTCTGGTGCCCGGCTTCCAGACCTATCCGAACAACACCGACGCCGC CCGCGTCACCTACCACGGCCTCACCGACGAGGACTTCTCGCCCCGCCTGCAGGTGCTGATCGACGGCCGGTCGCAGTATT CGCCGCTGTTCCGCAACGGGGTGAACTGGGCGACGCTGCCGGTGGCGCTGGAAGACATCGAGCGCATCGAGGTGGTGCGC GGCAGCAACGCGGTGTCCTACGGCTCCAACGCCTTCCTCGGCGTCATCAACATCATCACGGTCGAGCCGGCGCTGGTGCG CGGCACCTCGATCAGCACCAACATCGGCAACCAGGGCGTGCGCGACCTGACGCTGCGCCACGGCACCCATCTCGGTGAAA GCGGCGACCTGCGCATCACCTACCAGTCCAAGAAGGACGACGGCCTCAAGGACCAGTTCGACTGGAAGGACTCCTTCGAG TCGCGCCTGATCGACCTGCGCTCCGACCTTTGGCTGACCAACCGCGACCAGCTGCAGCTCTCGCTCGGACATGTGGACGC AGTCACACGGCGCGGCCGGCTCGCGCGCAGCAACGGCGTGCTGACCGGCGGCGAGGACCCGGAAAACCCGCTGCGCGATT TCACCCAGTCCGACTCCTACGTGCAGGCCATGTGGCGGCATGCGCTGGACGACGGCGCCGACATCCAGCTGCGCTACGCC TACACCGAGAGCCGCGGCTCGGAGATGCACACCGAGCGCTACGGCAACGTACTGTTCAAGGTGGATGCGGTGGGCGACCT CGGCACCCGCCACGAACTCGAAGCCCAGCACAGCTTCGCCCCCACCGAAACCACCCGCCTCGCGTGGGGCGGCGCCTACC GGCTCGACAGCCTCACGTCGGACAACTACCTGCCCGACGGGACCGTGTATCGCCGCGTCGCGCGGATCTTCGGCAACCTG GAATGGAAGCCGGCCGAGTGGCTGACGACCAACCTCGGCGCCGCCACCGAATACGATTCGATCGCCGGGCGCAATTTCTC GCCGCGCCTCAGCACCAGCTTCCACCTCAATCCGGAGAACACGATCCGGATCGGCGCGTCGCGCGCGTTCCGCACCGGTG CCACGGTCGATTACGTCGGCAACGTCCGCGCCACGCCCTACGGCACCACCGACGGCTCGCCCGTGCCGCCAATCGCGGTG CAGGACATGTACGGCGACCCCGACATGGCGCAGGAAAAGATCACCACGGTCGAACTCGGCTATCTCGGCGAATGGTCCGC GCTGCGCAGCAGTCTGGACGTGCGCCTGTTCCGCGAACGCGTTCCCAACCGCACGCTGTCGATCCGCCGCCGCGTCAGCG ACCCCGCGCTATGCGACCAGCCGCTGACCGGGCGCTGCGCCTCGCCCTACTTCACGCTGCCGATCCAGCGCGTGAAGATC GAGGGCGTGGAATACCAGTGGCGCTGGCAGCCGTTCAACGACACCCGCTTGCTGCTGGGCCAGTCCTTCATCCGAATCAA GTCCGACTTCCTCGCCTCGGCAATGGACTATCCGGTGCCGACCACGCTCGACGACCCGCGCCAGGCCGCCCGCATCGACG CCCATACCGAACAGTCGGCCCCCGAGCGTTCGACCTCGCTGCTGCTGATGCAGAAGCTGCCGGGCAACATCGATTTCTCG CTCGCCGGCTACTGGGTGGACGCGATGAAATGGACGCGCAACAGTTCGGTGGACTTCTACCGCCGCTTCGACATGCGCCT CGGCTACCCCTTCGAGTTCGGCCCGACGCGGGGCGAGATCGCCTACACCGCGCAGTCCATCAACGGGGCCCACGGCGAAT TCAAGTCCAGCGGCGAACCGGCCGACCGCGTCGTCGACCTGCGCCACTGGATCACGCTGCGCATCGACCTGTAA
Upstream 100 bases:
>100_bases GTGCCGCGGGTCATTGACGGAGTCCTCGACCGCCACCGATACTTCGTCGCGGGCCGGCTTCGCCGCTGCCACTTAAGTAA TAAGAAGATTCGGGAATTCC
Downstream 100 bases:
>100_bases GCAGCGCGCGCCGCAGCGACGGCGCGCGGCTTTGGCGGCGGCGGCCGTAGAATCGGCCCTCGATCCGCTTTTCGCCCTCT CCGCCCGATGCCGTCCGCCC
Product: putative TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 717; Mature: 717
Protein sequence:
>717_residues MQPAAALRSCPARVPGQSVPARARLAGALSMLFGVLPGAALASEDLFFSELPIVATVSRLPQRLADASASVTVIDRDMIK ASGARDLNDVFRLVPGFQTYPNNTDAARVTYHGLTDEDFSPRLQVLIDGRSQYSPLFRNGVNWATLPVALEDIERIEVVR GSNAVSYGSNAFLGVINIITVEPALVRGTSISTNIGNQGVRDLTLRHGTHLGESGDLRITYQSKKDDGLKDQFDWKDSFE SRLIDLRSDLWLTNRDQLQLSLGHVDAVTRRGRLARSNGVLTGGEDPENPLRDFTQSDSYVQAMWRHALDDGADIQLRYA YTESRGSEMHTERYGNVLFKVDAVGDLGTRHELEAQHSFAPTETTRLAWGGAYRLDSLTSDNYLPDGTVYRRVARIFGNL EWKPAEWLTTNLGAATEYDSIAGRNFSPRLSTSFHLNPENTIRIGASRAFRTGATVDYVGNVRATPYGTTDGSPVPPIAV QDMYGDPDMAQEKITTVELGYLGEWSALRSSLDVRLFRERVPNRTLSIRRRVSDPALCDQPLTGRCASPYFTLPIQRVKI EGVEYQWRWQPFNDTRLLLGQSFIRIKSDFLASAMDYPVPTTLDDPRQAARIDAHTEQSAPERSTSLLLMQKLPGNIDFS LAGYWVDAMKWTRNSSVDFYRRFDMRLGYPFEFGPTRGEIAYTAQSINGAHGEFKSSGEPADRVVDLRHWITLRIDL
Sequences:
>Translated_717_residues MQPAAALRSCPARVPGQSVPARARLAGALSMLFGVLPGAALASEDLFFSELPIVATVSRLPQRLADASASVTVIDRDMIK ASGARDLNDVFRLVPGFQTYPNNTDAARVTYHGLTDEDFSPRLQVLIDGRSQYSPLFRNGVNWATLPVALEDIERIEVVR GSNAVSYGSNAFLGVINIITVEPALVRGTSISTNIGNQGVRDLTLRHGTHLGESGDLRITYQSKKDDGLKDQFDWKDSFE SRLIDLRSDLWLTNRDQLQLSLGHVDAVTRRGRLARSNGVLTGGEDPENPLRDFTQSDSYVQAMWRHALDDGADIQLRYA YTESRGSEMHTERYGNVLFKVDAVGDLGTRHELEAQHSFAPTETTRLAWGGAYRLDSLTSDNYLPDGTVYRRVARIFGNL EWKPAEWLTTNLGAATEYDSIAGRNFSPRLSTSFHLNPENTIRIGASRAFRTGATVDYVGNVRATPYGTTDGSPVPPIAV QDMYGDPDMAQEKITTVELGYLGEWSALRSSLDVRLFRERVPNRTLSIRRRVSDPALCDQPLTGRCASPYFTLPIQRVKI EGVEYQWRWQPFNDTRLLLGQSFIRIKSDFLASAMDYPVPTTLDDPRQAARIDAHTEQSAPERSTSLLLMQKLPGNIDFS LAGYWVDAMKWTRNSSVDFYRRFDMRLGYPFEFGPTRGEIAYTAQSINGAHGEFKSSGEPADRVVDLRHWITLRIDL >Mature_717_residues MQPAAALRSCPARVPGQSVPARARLAGALSMLFGVLPGAALASEDLFFSELPIVATVSRLPQRLADASASVTVIDRDMIK ASGARDLNDVFRLVPGFQTYPNNTDAARVTYHGLTDEDFSPRLQVLIDGRSQYSPLFRNGVNWATLPVALEDIERIEVVR GSNAVSYGSNAFLGVINIITVEPALVRGTSISTNIGNQGVRDLTLRHGTHLGESGDLRITYQSKKDDGLKDQFDWKDSFE SRLIDLRSDLWLTNRDQLQLSLGHVDAVTRRGRLARSNGVLTGGEDPENPLRDFTQSDSYVQAMWRHALDDGADIQLRYA YTESRGSEMHTERYGNVLFKVDAVGDLGTRHELEAQHSFAPTETTRLAWGGAYRLDSLTSDNYLPDGTVYRRVARIFGNL EWKPAEWLTTNLGAATEYDSIAGRNFSPRLSTSFHLNPENTIRIGASRAFRTGATVDYVGNVRATPYGTTDGSPVPPIAV QDMYGDPDMAQEKITTVELGYLGEWSALRSSLDVRLFRERVPNRTLSIRRRVSDPALCDQPLTGRCASPYFTLPIQRVKI EGVEYQWRWQPFNDTRLLLGQSFIRIKSDFLASAMDYPVPTTLDDPRQAARIDAHTEQSAPERSTSLLLMQKLPGNIDFS LAGYWVDAMKWTRNSSVDFYRRFDMRLGYPFEFGPTRGEIAYTAQSINGAHGEFKSSGEPADRVVDLRHWITLRIDL
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=133, Percent_Identity=36.0902255639098, Blast_Score=72, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 79959; Mature: 79959
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPAAALRSCPARVPGQSVPARARLAGALSMLFGVLPGAALASEDLFFSELPIVATVSRL CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHH PQRLADASASVTVIDRDMIKASGARDLNDVFRLVPGFQTYPNNTDAARVTYHGLTDEDFS HHHHHCCCCEEEEEEHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC PRLQVLIDGRSQYSPLFRNGVNWATLPVALEDIERIEVVRGSNAVSYGSNAFLGVINIIT CEEEEEECCCHHCCHHHHCCCCEEEEHHHHHHHHHHHEEECCCCEECCCCCEEEEEEEEE VEPALVRGTSISTNIGNQGVRDLTLRHGTHLGESGDLRITYQSKKDDGLKDQFDWKDSFE ECCHHEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHH SRLIDLRSDLWLTNRDQLQLSLGHVDAVTRRGRLARSNGVLTGGEDPENPLRDFTQSDSY HHHHHHHHCCEECCCCCEEEEECHHHHHHHCCCEECCCCEEECCCCCCHHHHHHHCCCHH VQAMWRHALDDGADIQLRYAYTESRGSEMHTERYGNVLFKVDAVGDLGTRHELEAQHSFA HHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHCCEEEEEECCCCCCCCCHHHHHCCCC PTETTRLAWGGAYRLDSLTSDNYLPDGTVYRRVARIFGNLEWKPAEWLTTNLGAATEYDS CCCCCEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCHH IAGRNFSPRLSTSFHLNPENTIRIGASRAFRTGATVDYVGNVRATPYGTTDGSPVPPIAV HCCCCCCCCCCEEEEECCCCEEEEECCHHCCCCCCEEECCCEECCCCCCCCCCCCCCEEE QDMYGDPDMAQEKITTVELGYLGEWSALRSSLDVRLFRERVPNRTLSIRRRVSDPALCDQ ECCCCCCCHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC PLTGRCASPYFTLPIQRVKIEGVEYQWRWQPFNDTRLLLGQSFIRIKSDFLASAMDYPVP CCCCCCCCCEEECCEEEEEEECCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHCCCCC TTLDDPRQAARIDAHTEQSAPERSTSLLLMQKLPGNIDFSLAGYWVDAMKWTRNSSVDFY CCCCCCHHHHHCCCCCCCCCCCHHHHEEEEECCCCCCEEEEHHEEEEHHHHCCCCCCCEE RRFDMRLGYPFEFGPTRGEIAYTAQSINGAHGEFKSSGEPADRVVDLRHWITLRIDL EEECCEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHEEEEEEEEEEEEC >Mature Secondary Structure MQPAAALRSCPARVPGQSVPARARLAGALSMLFGVLPGAALASEDLFFSELPIVATVSRL CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHH PQRLADASASVTVIDRDMIKASGARDLNDVFRLVPGFQTYPNNTDAARVTYHGLTDEDFS HHHHHCCCCEEEEEEHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC PRLQVLIDGRSQYSPLFRNGVNWATLPVALEDIERIEVVRGSNAVSYGSNAFLGVINIIT CEEEEEECCCHHCCHHHHCCCCEEEEHHHHHHHHHHHEEECCCCEECCCCCEEEEEEEEE VEPALVRGTSISTNIGNQGVRDLTLRHGTHLGESGDLRITYQSKKDDGLKDQFDWKDSFE ECCHHEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHH SRLIDLRSDLWLTNRDQLQLSLGHVDAVTRRGRLARSNGVLTGGEDPENPLRDFTQSDSY HHHHHHHHCCEECCCCCEEEEECHHHHHHHCCCEECCCCEEECCCCCCHHHHHHHCCCHH VQAMWRHALDDGADIQLRYAYTESRGSEMHTERYGNVLFKVDAVGDLGTRHELEAQHSFA HHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHCCEEEEEECCCCCCCCCHHHHHCCCC PTETTRLAWGGAYRLDSLTSDNYLPDGTVYRRVARIFGNLEWKPAEWLTTNLGAATEYDS CCCCCEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHEECCCCCCCCHH IAGRNFSPRLSTSFHLNPENTIRIGASRAFRTGATVDYVGNVRATPYGTTDGSPVPPIAV HCCCCCCCCCCEEEEECCCCEEEEECCHHCCCCCCEEECCCEECCCCCCCCCCCCCCEEE QDMYGDPDMAQEKITTVELGYLGEWSALRSSLDVRLFRERVPNRTLSIRRRVSDPALCDQ ECCCCCCCHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC PLTGRCASPYFTLPIQRVKIEGVEYQWRWQPFNDTRLLLGQSFIRIKSDFLASAMDYPVP CCCCCCCCCEEECCEEEEEEECCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHCCCCC TTLDDPRQAARIDAHTEQSAPERSTSLLLMQKLPGNIDFSLAGYWVDAMKWTRNSSVDFY CCCCCCHHHHHCCCCCCCCCCCHHHHEEEEECCCCCCEEEEHHEEEEHHHHCCCCCCCEE RRFDMRLGYPFEFGPTRGEIAYTAQSINGAHGEFKSSGEPADRVVDLRHWITLRIDL EEECCEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHEEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]