Click here to switch to the map view.

The map label for this gene is ygdH [C]

Identifier: 119899890

GI number: 119899890

Start: 3956755

End: 3957477

Strand: Direct

Name: ygdH [C]

Synonym: azo3601

Alternate gene names: 119899890

Gene position: 3956755-3957477 (Clockwise)

Preceding gene: 119899862

Following gene: 119899891

Centisome position: 90.42

GC content: 62.93

Gene sequence:

>723_bases
ATGACCGCGAAAGACAAGCTCTCCCACAGCCTGCAAGGCACCGCGCCGCGCTTCAACGCGCGCGAGTCCTGGCGAATCTT
CGGAATTATGGCAGAGTTCGTCGAGGCGACCGAACGCCTCAATGCCATTCGCCCGGCGGTATCCATCTTCGGCAGTGCGC
GCATTCCGCCGGACCACATGTACTACATGCTCACCGAGCAGATCGCCCGGCAGCTGTCGGATGCGGGCTTCTCGGTGATC
TCCGGCGGCGGCCCGGGCATCATGGAGGCCGCCAACAAGGGCGCCTTCTTCGGCAAGAGCCCCTCGGTCGGCCTCAACAT
CCAGCTGCCGATGGAGCAGCAGGCCAACCCCTACCAGGACATCTCGCAGACCTTCCAGCACTTCTTCGCGCGCAAGTTCA
TGTTCGTGAAGTTCGCCGCCGCCTATGTGGTGATGCCGGGCGGCTTCGGCACGCTGGACGAGTTGCTGGAAGCGATGACC
CTGATCCAGACCGGCAAGAGCCGGCGGATTCCGGTGATCCTGGTGCATGGCCCGTTCTGGCAGGGCCTGCTCGACTGGTT
CCGCGACCGCCTGGTGGCCGAGCGCATGATCCATCCGGACGATCTCGATCTGGTCCAGGTGATCGACAAGCCGGAGGACG
TGGTCGAAGCCATCTTCAAGCACTACGAAACCCGCGGCTTCCTGCCGCTGCCTGAAGAACATGAACTGATGCTCAACCTT
TGA

Upstream 100 bases:

>100_bases
CGAGCAGCAGGGTGGGCATCGTGGATTCCTGGCGGCGGGCCGGGACGACGGACGCACGCGAGCGTCATCCCGGCCGAGAA
CAAAGACAGTAGAGAAACGA

Downstream 100 bases:

>100_bases
ACCCGTTTCGGCCGCGGAACACCCCTGCGCGCGGTTGCACGGCGCCCGGCCGGGCCGGCGTCGGAAAGCGGCGCCCCTTG
CCCACTGCTAGAATCCGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MTAKDKLSHSLQGTAPRFNARESWRIFGIMAEFVEATERLNAIRPAVSIFGSARIPPDHMYYMLTEQIARQLSDAGFSVI
SGGGPGIMEAANKGAFFGKSPSVGLNIQLPMEQQANPYQDISQTFQHFFARKFMFVKFAAAYVVMPGGFGTLDELLEAMT
LIQTGKSRRIPVILVHGPFWQGLLDWFRDRLVAERMIHPDDLDLVQVIDKPEDVVEAIFKHYETRGFLPLPEEHELMLNL

Sequences:

>Translated_240_residues
MTAKDKLSHSLQGTAPRFNARESWRIFGIMAEFVEATERLNAIRPAVSIFGSARIPPDHMYYMLTEQIARQLSDAGFSVI
SGGGPGIMEAANKGAFFGKSPSVGLNIQLPMEQQANPYQDISQTFQHFFARKFMFVKFAAAYVVMPGGFGTLDELLEAMT
LIQTGKSRRIPVILVHGPFWQGLLDWFRDRLVAERMIHPDDLDLVQVIDKPEDVVEAIFKHYETRGFLPLPEEHELMLNL
>Mature_239_residues
TAKDKLSHSLQGTAPRFNARESWRIFGIMAEFVEATERLNAIRPAVSIFGSARIPPDHMYYMLTEQIARQLSDAGFSVIS
GGGPGIMEAANKGAFFGKSPSVGLNIQLPMEQQANPYQDISQTFQHFFARKFMFVKFAAAYVVMPGGFGTLDELLEAMTL
IQTGKSRRIPVILVHGPFWQGLLDWFRDRLVAERMIHPDDLDLVQVIDKPEDVVEAIFKHYETRGFLPLPEEHELMLNL

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27074; Mature: 26942

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAKDKLSHSLQGTAPRFNARESWRIFGIMAEFVEATERLNAIRPAVSIFGSARIPPDHM
CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
YYMLTEQIARQLSDAGFSVISGGGPGIMEAANKGAFFGKSPSVGLNIQLPMEQQANPYQD
HHHHHHHHHHHHHHCCCEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEECCHHCCCCHHH
ISQTFQHFFARKFMFVKFAAAYVVMPGGFGTLDELLEAMTLIQTGKSRRIPVILVHGPFW
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHH
QGLLDWFRDRLVAERMIHPDDLDLVQVIDKPEDVVEAIFKHYETRGFLPLPEEHELMLNL
HHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECC
>Mature Secondary Structure 
TAKDKLSHSLQGTAPRFNARESWRIFGIMAEFVEATERLNAIRPAVSIFGSARIPPDHM
CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
YYMLTEQIARQLSDAGFSVISGGGPGIMEAANKGAFFGKSPSVGLNIQLPMEQQANPYQD
HHHHHHHHHHHHHHCCCEEECCCCCHHHHHCCCCCCCCCCCCCCEEEEECCHHCCCCHHH
ISQTFQHFFARKFMFVKFAAAYVVMPGGFGTLDELLEAMTLIQTGKSRRIPVILVHGPFW
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHH
QGLLDWFRDRLVAERMIHPDDLDLVQVIDKPEDVVEAIFKHYETRGFLPLPEEHELMLNL
HHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA