Click here to switch to the map view.

The map label for this gene is waaP3 [H]

Identifier: 119899859

GI number: 119899859

Start: 3916293

End: 3917066

Strand: Direct

Name: waaP3 [H]

Synonym: azo3570

Alternate gene names: 119899859

Gene position: 3916293-3917066 (Clockwise)

Preceding gene: 119899858

Following gene: 119899860

Centisome position: 89.49

GC content: 72.22

Gene sequence:

>774_bases
ATGAAGGACTTCCTCGCCCCCGACCTGCGCGCGCTGTTCGCGCGCCACCACCTCACCGACTTCCTGGCGCTGTGGGCGCT
CGACCTGCCCGGCGTCGACGCGCCCAACACCGGCCGCGGCGGCTGGAGCAGCGTGAGCCGGCTGGAGCTGGCCGACGAAC
ATGGCCACATCCACGCGTTCTACCTCAAGCGCCAGATCGACCATCTCAGCCGCAGCCTGCGGCGGCCCTTCGGCGAAGCG
ACCTTCGCGCGCGAGTTCCGCAACATCCTGCGCTACGCCGAGGACGGCGTGCCCGCGCTGCAAGCGGCCTTCTTCGGCCA
ACGCCGCATCGGCGGCAAGGCCTGCGCGATCCTCGTCACCCGCGCGCTGGACGACTACCGCCCGCTCGACGCCTGGCTGC
GCGACTGGCCGACGCTGACGCGCGGCGAACGCCGCCATCTGCTCGGCGCCACCGCGGCGCTGGTCAAGCAATTGCACGCC
GCCGGCCACCTGCACAACTGCCTCTACCCCAAACACATCTTCGTACGCAGCGCGTCCGCCCCCGGTGCAGCCCCGGCCGC
GTGCCTGATCGACCTGGAAAAGACGCGCCGGCCGCTGCGCCGCGCACCGCTGCTGCGCGACCTCGACACCCTGAACCGCC
ACGGCAAGGGCCCCAGCGCGGCCGACCGCCTGCGCTTCCTGCTGCGTTATCTCGACCTGCCCGCGCTGGACGGGCCGAGC
CGCGCGCTCGTGCGCCAGTTGCTCGGACGACGCCGGCACAAGACCCACGCATGA

Upstream 100 bases:

>100_bases
CTCGACTACGTCGGGCGGCCCCGCCTGACCGCCGCCGACAAGCGCCGCCTGCGCCGCGTGCTGGCCTTCTTCGAGGGGCG
CGAATGATGCGGGGCCGCGG

Downstream 100 bases:

>100_bases
ATCCTTCGACGATTGCCGCGACTGCGCACGACGCGCCGCTGCTGGACGCCGCGGCGCTGGCGCATGCCGGGCGCACGCCG
GCGACGCCATTCCGCATCCG

Product: lipopolysaccharide core biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKDFLAPDLRALFARHHLTDFLALWALDLPGVDAPNTGRGGWSSVSRLELADEHGHIHAFYLKRQIDHLSRSLRRPFGEA
TFAREFRNILRYAEDGVPALQAAFFGQRRIGGKACAILVTRALDDYRPLDAWLRDWPTLTRGERRHLLGATAALVKQLHA
AGHLHNCLYPKHIFVRSASAPGAAPAACLIDLEKTRRPLRRAPLLRDLDTLNRHGKGPSAADRLRFLLRYLDLPALDGPS
RALVRQLLGRRRHKTHA

Sequences:

>Translated_257_residues
MKDFLAPDLRALFARHHLTDFLALWALDLPGVDAPNTGRGGWSSVSRLELADEHGHIHAFYLKRQIDHLSRSLRRPFGEA
TFAREFRNILRYAEDGVPALQAAFFGQRRIGGKACAILVTRALDDYRPLDAWLRDWPTLTRGERRHLLGATAALVKQLHA
AGHLHNCLYPKHIFVRSASAPGAAPAACLIDLEKTRRPLRRAPLLRDLDTLNRHGKGPSAADRLRFLLRYLDLPALDGPS
RALVRQLLGRRRHKTHA
>Mature_257_residues
MKDFLAPDLRALFARHHLTDFLALWALDLPGVDAPNTGRGGWSSVSRLELADEHGHIHAFYLKRQIDHLSRSLRRPFGEA
TFAREFRNILRYAEDGVPALQAAFFGQRRIGGKACAILVTRALDDYRPLDAWLRDWPTLTRGERRHLLGATAALVKQLHA
AGHLHNCLYPKHIFVRSASAPGAAPAACLIDLEKTRRPLRRAPLLRDLDTLNRHGKGPSAADRLRFLLRYLDLPALDGPS
RALVRQLLGRRRHKTHA

Specific function: May be an environmental sensor responsive to several stimuli, including internal pH, proton motive force, temperature, and possibly other unknown factors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. KdkA/rfaP family [H]

Homologues:

Organism=Escherichia coli, GI1788569, Length=184, Percent_Identity=32.0652173913043, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011009
- InterPro:   IPR010440 [H]

Pfam domain/function: PF06293 Kdo [H]

EC number: NA

Molecular weight: Translated: 28972; Mature: 28972

Theoretical pI: Translated: 11.33; Mature: 11.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDFLAPDLRALFARHHLTDFLALWALDLPGVDAPNTGRGGWSSVSRLELADEHGHIHAF
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
YLKRQIDHLSRSLRRPFGEATFAREFRNILRYAEDGVPALQAAFFGQRRIGGKACAILVT
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
RALDDYRPLDAWLRDWPTLTRGERRHLLGATAALVKQLHAAGHLHNCLYPKHIFVRSASA
HHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCC
PGAAPAACLIDLEKTRRPLRRAPLLRDLDTLNRHGKGPSAADRLRFLLRYLDLPALDGPS
CCCCCHHHHEEHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCH
RALVRQLLGRRRHKTHA
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKDFLAPDLRALFARHHLTDFLALWALDLPGVDAPNTGRGGWSSVSRLELADEHGHIHAF
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
YLKRQIDHLSRSLRRPFGEATFAREFRNILRYAEDGVPALQAAFFGQRRIGGKACAILVT
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHH
RALDDYRPLDAWLRDWPTLTRGERRHLLGATAALVKQLHAAGHLHNCLYPKHIFVRSASA
HHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCC
PGAAPAACLIDLEKTRRPLRRAPLLRDLDTLNRHGKGPSAADRLRFLLRYLDLPALDGPS
CCCCCHHHHEEHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCH
RALVRQLLGRRRHKTHA
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6087316; 9205837; 9278503; 1537798 [H]