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The map label for this gene is cbiD [H]

Identifier: 119899821

GI number: 119899821

Start: 3876482

End: 3877690

Strand: Direct

Name: cbiD [H]

Synonym: azo3532

Alternate gene names: 119899821

Gene position: 3876482-3877690 (Clockwise)

Preceding gene: 119899820

Following gene: 119899822

Centisome position: 88.58

GC content: 70.8

Gene sequence:

>1209_bases
ATGAGCACCGGCCACGCGCTTTCGCCGGCGTCCCAGGAGAAGATCCGCAAGGGCGACCCCAAGCGCGACCGCGGCAACCG
CAGCGGCTTTTCCACCGGCGCCAACTCAGCGGCGGCCGCCGCCGCGGCCACGCTCGGCCTGGTGCGCGGCGCGGTGCCGG
ACACGGTGGAGTGCGTACTGCCCAACACCCAGATCGTGCGCTTCGCCATCGCCGACGGCTGTGTGGACGGCGACCGCGCC
CACGCGGTCAGCATCAAGGACGCCGGCGACGACCCGGATGCCACCCACGGCGCCCACCTCACCGCCGACGTGCGCCGCAT
CCCCGGCGGCGGCGGTGCCATCGTCCTCAAGGGCGGGCCGGGCGTCGGCGTGGTCACCAAGCCCGGGCTCGGGCTGGAGG
TCGGCGGTCCGGCGATCAACCCGGTGCCACGCAGCAACATCGCCGCCAACGTCGCCGCCGCCGGCAAAACCATCCTCGCC
GCCGGCGACAGCCTGGAAGTGACGATCTCGGTGCCGGGCGGCGAGGAGATGGCGAAGAAGACGCTCAACGCGCGCCTCGG
CATCCTCGGCGGCATCTCCATCCTCGGCACCACCGGCATCGTGCGGCCTTACTCCACCGCGGCCTTCCGCGCCAGCGTGA
TCCAGGCCGTCGACGTCGCCGCCAACCAGGGCCAGACCAGCGTGGTGTTCACCACCGGCGGGCGCACCGAGAAGTGCGCG
ATGCGCGAATTCCCCGAACTGGACGAAGCCTGCTTCGTGCAGATGGGCGACTTCGTCAAGGCCGCCTTCACCACCGCATT
GAAGCAACGCATGCGGCACATCATCGTCGGCGCCATGGTCGGCAAGCTCACCAAGATCGCCCAGGGCCTATCGGTGACCC
ACGCCTGGCGCGAAGAGGTGGACCGCGAGCTGATCGCCGGCGCCGCGATCGAGATCGGCGCGCCGCCCTCGCTGGTGGAA
GAAATCCGCGCCGCCGAAACCGCCCGCTTCGCGGCCGAAAAACTCGACGAACTCGGGCTGGCCGTCGCCTTCCACCGCGC
CCTGGCCGAGCGCGCGATCACCAGCCTGCGCCAGCGCTACCCCGGCCCGCACCGGCTGTCGGTGATGGCCTGCAATTTCG
AAGGCAAGCCTATCGTCACGGTGCATGACGAAGCGCCGGCCGGCATGGACTACGCCCCGCTCCCCGATACAGACCCCGAT
GCAGACTGA

Upstream 100 bases:

>100_bases
GTGATCCGCGGCCGCAAGGGCGGCTCGACGCTGGTGGTCGCGGCGATCCACGCCCTGCTCGGGCTGGCCGAAGCGCGCCA
GCGCGAAGGGCGCTGAGCCG

Downstream 100 bases:

>100_bases
CACCCTCCACATCATCGGCATCCTCGACGACGGCTGGGCCGGCCTCACCGACGCCGCCCGCCAACGCCTTGCCGGCTGCG
GCCTGGTGATCGGCGCCGCG

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MSTGHALSPASQEKIRKGDPKRDRGNRSGFSTGANSAAAAAAATLGLVRGAVPDTVECVLPNTQIVRFAIADGCVDGDRA
HAVSIKDAGDDPDATHGAHLTADVRRIPGGGGAIVLKGGPGVGVVTKPGLGLEVGGPAINPVPRSNIAANVAAAGKTILA
AGDSLEVTISVPGGEEMAKKTLNARLGILGGISILGTTGIVRPYSTAAFRASVIQAVDVAANQGQTSVVFTTGGRTEKCA
MREFPELDEACFVQMGDFVKAAFTTALKQRMRHIIVGAMVGKLTKIAQGLSVTHAWREEVDRELIAGAAIEIGAPPSLVE
EIRAAETARFAAEKLDELGLAVAFHRALAERAITSLRQRYPGPHRLSVMACNFEGKPIVTVHDEAPAGMDYAPLPDTDPD
AD

Sequences:

>Translated_402_residues
MSTGHALSPASQEKIRKGDPKRDRGNRSGFSTGANSAAAAAAATLGLVRGAVPDTVECVLPNTQIVRFAIADGCVDGDRA
HAVSIKDAGDDPDATHGAHLTADVRRIPGGGGAIVLKGGPGVGVVTKPGLGLEVGGPAINPVPRSNIAANVAAAGKTILA
AGDSLEVTISVPGGEEMAKKTLNARLGILGGISILGTTGIVRPYSTAAFRASVIQAVDVAANQGQTSVVFTTGGRTEKCA
MREFPELDEACFVQMGDFVKAAFTTALKQRMRHIIVGAMVGKLTKIAQGLSVTHAWREEVDRELIAGAAIEIGAPPSLVE
EIRAAETARFAAEKLDELGLAVAFHRALAERAITSLRQRYPGPHRLSVMACNFEGKPIVTVHDEAPAGMDYAPLPDTDPD
AD
>Mature_401_residues
STGHALSPASQEKIRKGDPKRDRGNRSGFSTGANSAAAAAAATLGLVRGAVPDTVECVLPNTQIVRFAIADGCVDGDRAH
AVSIKDAGDDPDATHGAHLTADVRRIPGGGGAIVLKGGPGVGVVTKPGLGLEVGGPAINPVPRSNIAANVAAAGKTILAA
GDSLEVTISVPGGEEMAKKTLNARLGILGGISILGTTGIVRPYSTAAFRASVIQAVDVAANQGQTSVVFTTGGRTEKCAM
REFPELDEACFVQMGDFVKAAFTTALKQRMRHIIVGAMVGKLTKIAQGLSVTHAWREEVDRELIAGAAIEIGAPPSLVEE
IRAAETARFAAEKLDELGLAVAFHRALAERAITSLRQRYPGPHRLSVMACNFEGKPIVTVHDEAPAGMDYAPLPDTDPDA
D

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 41509; Mature: 41378

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGHALSPASQEKIRKGDPKRDRGNRSGFSTGANSAAAAAAATLGLVRGAVPDTVECVL
CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEC
PNTQIVRFAIADGCVDGDRAHAVSIKDAGDDPDATHGAHLTADVRRIPGGGGAIVLKGGP
CCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEHHHCCCCCCCEEEEECCC
GVGVVTKPGLGLEVGGPAINPVPRSNIAANVAAAGKTILAAGDSLEVTISVPGGEEMAKK
CCCEEECCCCCEEECCCCCCCCCCCCHHHHHHHCCCEEEECCCCEEEEEECCCCHHHHHH
TLNARLGILGGISILGTTGIVRPYSTAAFRASVIQAVDVAANQGQTSVVFTTGGRTEKCA
HHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHH
MREFPELDEACFVQMGDFVKAAFTTALKQRMRHIIVGAMVGKLTKIAQGLSVTHAWREEV
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
DRELIAGAAIEIGAPPSLVEEIRAAETARFAAEKLDELGLAVAFHRALAERAITSLRQRY
HHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGPHRLSVMACNFEGKPIVTVHDEAPAGMDYAPLPDTDPDAD
CCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STGHALSPASQEKIRKGDPKRDRGNRSGFSTGANSAAAAAAATLGLVRGAVPDTVECVL
CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEC
PNTQIVRFAIADGCVDGDRAHAVSIKDAGDDPDATHGAHLTADVRRIPGGGGAIVLKGGP
CCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEHHHCCCCCCCEEEEECCC
GVGVVTKPGLGLEVGGPAINPVPRSNIAANVAAAGKTILAAGDSLEVTISVPGGEEMAKK
CCCEEECCCCCEEECCCCCCCCCCCCHHHHHHHCCCEEEECCCCEEEEEECCCCHHHHHH
TLNARLGILGGISILGTTGIVRPYSTAAFRASVIQAVDVAANQGQTSVVFTTGGRTEKCA
HHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHH
MREFPELDEACFVQMGDFVKAAFTTALKQRMRHIIVGAMVGKLTKIAQGLSVTHAWREEV
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
DRELIAGAAIEIGAPPSLVEEIRAAETARFAAEKLDELGLAVAFHRALAERAITSLRQRY
HHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGPHRLSVMACNFEGKPIVTVHDEAPAGMDYAPLPDTDPDAD
CCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA