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The map label for this gene is yggS [C]

Identifier: 119899756

GI number: 119899756

Start: 3803499

End: 3804212

Strand: Reverse

Name: yggS [C]

Synonym: azo3467

Alternate gene names: 119899756

Gene position: 3804212-3803499 (Counterclockwise)

Preceding gene: 119899764

Following gene: 119899755

Centisome position: 86.93

GC content: 69.75

Gene sequence:

>714_bases
ATGACATCAATCTCCGCCAACTTGCAAGCCGTGAGCGAGCGCATCCGTGACGCAGCGCGCGCTGCCGGACGCGACCCCGC
AGCGGTGCGTCTGCTGGCGGTGAGCAAGACCTGGCCCGCGCAATCGGTGCGCGAAGCCGCCGCCGCCGGACAGCGCGCCT
TTGGCGAAAACTACGTGCAGGAGGCGCTTGCCAAGCTGGCCGAAGTGGACGACCCGGCGTTGGAGTGGCACTTCATCGGC
CCCCTGCAAAGCAACAAGACCCGCGCCGTCGCGCAGCACTTCGCGTGGGTGCACAGCATCGACCGGCTCAAGCTGGCCGA
ACGCCTTTCCGCCCAGCGCGACGTCCATCTGCCGCCACTCAATGTCTGCCTTCAGGTCAATGTCAGCGGCGAGGACAGCA
AGAGCGGAGTCGCGCCCGACGAGGTGCTGCCCCTGGCGCGCGGGGTGGCGGCGCTGCCGCGCCTGGTGCTGCGCGGCCTG
ATGTGCATTCCCGAACCGACCGACGACGTCACCCTTCAACGGCGCCGTTTTGCCACGCTGCGCGGCCTGCGCGACACCTT
GGCCGCCGAGGGCATCGTGCTCGACACCCTGTCGATGGGCATGTCGCACGATCTGGAAGCCGCGGTGGCGGAAGGGGCTA
CGCTCGTGCGCGTCGGCACCGCGATCTTCGGCGCGCGCCCGCGGTCCGAGTCGGCAGCGGTGGCGGGCGGTTGA

Upstream 100 bases:

>100_bases
AGGGCTGAGGCGGTGGGAGCAGGGCGCGCCGGGGCGGGCGTGCAGGGGGCCGGTGCTATACTTTCGGCGCAATGCTCCAA
GGGACTGAGGCTCCGGCAAT

Downstream 100 bases:

>100_bases
GTCCGGCGGTCCGGCGTGGCCCGGCGCGCGTCCTGTCAATAATCAGTTCATCTCATCTGGCGGTGGAACCGACATGAAAA
TTACCTTCCTCGGCGGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MTSISANLQAVSERIRDAARAAGRDPAAVRLLAVSKTWPAQSVREAAAAGQRAFGENYVQEALAKLAEVDDPALEWHFIG
PLQSNKTRAVAQHFAWVHSIDRLKLAERLSAQRDVHLPPLNVCLQVNVSGEDSKSGVAPDEVLPLARGVAALPRLVLRGL
MCIPEPTDDVTLQRRRFATLRGLRDTLAAEGIVLDTLSMGMSHDLEAAVAEGATLVRVGTAIFGARPRSESAAVAGG

Sequences:

>Translated_237_residues
MTSISANLQAVSERIRDAARAAGRDPAAVRLLAVSKTWPAQSVREAAAAGQRAFGENYVQEALAKLAEVDDPALEWHFIG
PLQSNKTRAVAQHFAWVHSIDRLKLAERLSAQRDVHLPPLNVCLQVNVSGEDSKSGVAPDEVLPLARGVAALPRLVLRGL
MCIPEPTDDVTLQRRRFATLRGLRDTLAAEGIVLDTLSMGMSHDLEAAVAEGATLVRVGTAIFGARPRSESAAVAGG
>Mature_236_residues
TSISANLQAVSERIRDAARAAGRDPAAVRLLAVSKTWPAQSVREAAAAGQRAFGENYVQEALAKLAEVDDPALEWHFIGP
LQSNKTRAVAQHFAWVHSIDRLKLAERLSAQRDVHLPPLNVCLQVNVSGEDSKSGVAPDEVLPLARGVAALPRLVLRGLM
CIPEPTDDVTLQRRRFATLRGLRDTLAAEGIVLDTLSMGMSHDLEAAVAEGATLVRVGTAIFGARPRSESAAVAGG

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=243, Percent_Identity=40.7407407407407, Blast_Score=137, Evalue=1e-32,
Organism=Escherichia coli, GI1789321, Length=238, Percent_Identity=52.9411764705882, Blast_Score=232, Evalue=2e-62,
Organism=Caenorhabditis elegans, GI17533025, Length=235, Percent_Identity=35.7446808510638, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6319435, Length=245, Percent_Identity=34.6938775510204, Blast_Score=119, Evalue=3e-28,
Organism=Drosophila melanogaster, GI45550861, Length=246, Percent_Identity=37.3983739837398, Blast_Score=127, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25264; Mature: 25133

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSISANLQAVSERIRDAARAAGRDPAAVRLLAVSKTWPAQSVREAAAAGQRAFGENYVQ
CCCCHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
EALAKLAEVDDPALEWHFIGPLQSNKTRAVAQHFAWVHSIDRLKLAERLSAQRDVHLPPL
HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NVCLQVNVSGEDSKSGVAPDEVLPLARGVAALPRLVLRGLMCIPEPTDDVTLQRRRFATL
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
RGLRDTLAAEGIVLDTLSMGMSHDLEAAVAEGATLVRVGTAIFGARPRSESAAVAGG
HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHCCCHHEEHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSISANLQAVSERIRDAARAAGRDPAAVRLLAVSKTWPAQSVREAAAAGQRAFGENYVQ
CCCHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
EALAKLAEVDDPALEWHFIGPLQSNKTRAVAQHFAWVHSIDRLKLAERLSAQRDVHLPPL
HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NVCLQVNVSGEDSKSGVAPDEVLPLARGVAALPRLVLRGLMCIPEPTDDVTLQRRRFATL
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
RGLRDTLAAEGIVLDTLSMGMSHDLEAAVAEGATLVRVGTAIFGARPRSESAAVAGG
HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHCCCHHEEHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]