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The map label for this gene is senC

Identifier: 119899582

GI number: 119899582

Start: 3632080

End: 3632682

Strand: Reverse

Name: senC

Synonym: azo3293

Alternate gene names: NA

Gene position: 3632682-3632080 (Counterclockwise)

Preceding gene: 119899583

Following gene: 119899580

Centisome position: 83.01

GC content: 66.0

Gene sequence:

>603_bases
ATGCTCCGAGTCCTGCTTTGCGCGGCCGCACTGGCCGCAACCGTCCTCGCCGGGGGATGTTCAGATCCGGCTCCCGCCTT
CCATTCCACCGACATCACCGGGGCAGACTACGGCAAGCAGTTTGCCCTGACCGACCATAGCGGCCAGCCGCGCGGGCTGA
CGGACTTCCGCGGCAAGGTCGTCACGCTGTTCTTCGGCTATACGCAGTGCCCGGACGTGTGCCCGAGCAATCTCACGTCG
ATGGCGGAAGTGGTGAAGCGCCTGGGGGCGGACGGCGAGCGCGTACAGGTGCTGTTCGTCACCGTCGACCCGGAACGCGA
TACGCGGGAACTGCTCGCCCAGTACGTCCCCGCATTCGATCCGCGCTTCGTCGGCCTTTACGGCACGCCTGAGCAGACGG
CCGACGTCGCGCGTGAATTCCGCATCTTCTACCGCAAGAGCGGAGATACCGCCGGCGGTGCATACACCATAGACCACTCG
GCCGGCACCTATGTGTTCGACCCGCAAGGCCGCCTGCGCCTCTACGTCCGGCATGGCGAGAGCGTCGACAACATCGTTGC
CGACCTCAAGCAGTTGCTCGCGGAGCCGACGGCGCGACGGTAA

Upstream 100 bases:

>100_bases
TGGCACGCCGCACTTTCCGCTTCTCCATCGTCTACCTATCATTGCTGTTCGCCGCGCTGCTCGCCGACCACTATCTGCGC
TTATAGAAGACCGCCTGACG

Downstream 100 bases:

>100_bases
ACGCAACGCGGCGACCAAAAGGCCGCCGCGGGTTCTTGCATACGGCTGCGCTGCTTACATTGCCGGCGCCAGCAGACCGC
GCATTTTCTGCATTGCCTTC

Product: SCO1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MLRVLLCAAALAATVLAGGCSDPAPAFHSTDITGADYGKQFALTDHSGQPRGLTDFRGKVVTLFFGYTQCPDVCPSNLTS
MAEVVKRLGADGERVQVLFVTVDPERDTRELLAQYVPAFDPRFVGLYGTPEQTADVAREFRIFYRKSGDTAGGAYTIDHS
AGTYVFDPQGRLRLYVRHGESVDNIVADLKQLLAEPTARR

Sequences:

>Translated_200_residues
MLRVLLCAAALAATVLAGGCSDPAPAFHSTDITGADYGKQFALTDHSGQPRGLTDFRGKVVTLFFGYTQCPDVCPSNLTS
MAEVVKRLGADGERVQVLFVTVDPERDTRELLAQYVPAFDPRFVGLYGTPEQTADVAREFRIFYRKSGDTAGGAYTIDHS
AGTYVFDPQGRLRLYVRHGESVDNIVADLKQLLAEPTARR
>Mature_200_residues
MLRVLLCAAALAATVLAGGCSDPAPAFHSTDITGADYGKQFALTDHSGQPRGLTDFRGKVVTLFFGYTQCPDVCPSNLTS
MAEVVKRLGADGERVQVLFVTVDPERDTRELLAQYVPAFDPRFVGLYGTPEQTADVAREFRIFYRKSGDTAGGAYTIDHS
AGTYVFDPQGRLRLYVRHGESVDNIVADLKQLLAEPTARR

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=156, Percent_Identity=37.8205128205128, Blast_Score=124, Evalue=8e-29,
Organism=Homo sapiens, GI281182722, Length=156, Percent_Identity=37.8205128205128, Blast_Score=124, Evalue=8e-29,
Organism=Homo sapiens, GI281182716, Length=156, Percent_Identity=37.8205128205128, Blast_Score=124, Evalue=8e-29,
Organism=Homo sapiens, GI153791313, Length=156, Percent_Identity=37.8205128205128, Blast_Score=124, Evalue=8e-29,
Organism=Homo sapiens, GI4759068, Length=154, Percent_Identity=35.7142857142857, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17531419, Length=173, Percent_Identity=30.635838150289, Blast_Score=103, Evalue=8e-23,
Organism=Saccharomyces cerevisiae, GI6319498, Length=137, Percent_Identity=34.3065693430657, Blast_Score=103, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6319511, Length=171, Percent_Identity=30.9941520467836, Blast_Score=90, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19920710, Length=157, Percent_Identity=36.9426751592357, Blast_Score=118, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21794; Mature: 21794

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRVLLCAAALAATVLAGGCSDPAPAFHSTDITGADYGKQFALTDHSGQPRGLTDFRGKV
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCEE
VTLFFGYTQCPDVCPSNLTSMAEVVKRLGADGERVQVLFVTVDPERDTRELLAQYVPAFD
EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCC
PRFVGLYGTPEQTADVAREFRIFYRKSGDTAGGAYTIDHSAGTYVFDPQGRLRLYVRHGE
CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEECCCCCEEEEEECCC
SVDNIVADLKQLLAEPTARR
CHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLRVLLCAAALAATVLAGGCSDPAPAFHSTDITGADYGKQFALTDHSGQPRGLTDFRGKV
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCEE
VTLFFGYTQCPDVCPSNLTSMAEVVKRLGADGERVQVLFVTVDPERDTRELLAQYVPAFD
EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCC
PRFVGLYGTPEQTADVAREFRIFYRKSGDTAGGAYTIDHSAGTYVFDPQGRLRLYVRHGE
CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEECCCCCEEEEEECCC
SVDNIVADLKQLLAEPTARR
CHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]