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The map label for this gene is yncD [H]

Identifier: 119899313

GI number: 119899313

Start: 3323986

End: 3326103

Strand: Direct

Name: yncD [H]

Synonym: azo3023

Alternate gene names: 119899313

Gene position: 3323986-3326103 (Clockwise)

Preceding gene: 119899312

Following gene: 119899314

Centisome position: 75.96

GC content: 69.64

Gene sequence:

>2118_bases
ATGACCCGCCCTGCCCGCCGCACCCGCGGCGCCCGCCCGCACACCCTCGCGCCGCTTGCCGCGGCCCTGCTCGGCGCCCT
CGCCAGCCTGCCCGCCATGGCACAGGAAACCGCCCCGACGCAGGTGCTGGCGCCCACGGTCATCACGGGCAGCCGGGTGG
AAGCCTCCAGCTTCGACCTGCCGTATTCGGTGGATAGCGTCAGCCTCGGCGCCGACAGCGCCGCCGGGTTGCGGGTGAAT
GTGTCCGAGGTGATGAACGCGGTGCCCGGCGTGGTGGTGCAGAACCGCCAGAACTACGCGCAGGACCTGCAGATTTCGGT
GCGCGGCTTCGGCGCGCGTGCTGCCTTCGGCGTGCGCGGCGTCAAGCTGATCGCCGACGGCATTCCCGCCACCAACCCGG
ACGGCCAGGGCCAGGCGGCCACCTTCAACCTCGACACCGCCGAGCGCATCGAGGTGCTGCGCGGGCCGATGGCCACGATC
TACGGCAACCACGCCGGCGGCGTCATCCAGCTGTTCTCGCGCGAGGGCCAGGGCGCGCCGCGGGTGTCGGCCGGGGTGTT
CGGCGGCGACCACGGCACGGTCAAGGTGGATATCGGCGCCGAGGGCGAGAAGAACGGCATCGGCTACGTGCTCGACGCCT
CGCACTTCGAGACCGACGGCGAACGCCGCTACAGCGCCGCGGAACGCAACCAGGCGTACGCCAAGCTCACCTTCCGGCCG
GACGAGGACAGCAAGCTCAACCTCATCTTCAGCAGCCTGCGCCAGCCCGAAACCGAAGACCCGCTGGGCCTCACCTGGGC
CACCTGGAAGCGCGACGAAACCGCGGTGGAAAACGTCGCGCTGCAGTACCGCACGCGCAAGGAGATCGACCACGTGCAGG
GCGGCGCCACCTACGAGCGCCGCTTCGGCAGCGATCGCCTGCAGGTGCAGGCCTACGCCGGCGAGCGCAGCGTGACCCAG
TACCAGTCCATCCCGCGCGCGGCGCAGACGCCGATCACCCACGCCGGCGGCGTGATCGACTTCGACCGCGAGTTCTACGG
CGTCGGCGCGCGCTATATCGCCGACCGCGAGATCGGCCCCGGCCGCCTCACGCTGACCGCCGGCATCGACTACGACCGCT
CCGAGGACGACCGCCAGGGCTACCAGAACTTCATCGGCACCGTGCTCGGGGTCAAGGGCGCGCTGCGCCGCGACGAGATC
GACACCGTCACCAGCACCGACCCCTATGTGCAGGCGGTGTGGCGCCAGGGCGATTTCGACTGGACGCTGGGCGTGCGCCA
CAGCGAGGTGAAGTTCGACGTCGATGACAAGTTCATCGTCGGTGCCAACCGCGACGACAGCGGCTCGGTGAGCTACCACC
AGACCTCGCCGGCCGTGGGCGTGCTGTGGCGGCTGACGCCGGTGCTCAACCTGTACGCCAGCTACGGCCGCGGCTTCGAG
ACGCCGACGCTGAACGAACTCTCCTACTCGGCCTCAGGCGGCTTCAACTTCGACCTCAAGCCGGCGCGCAGCCGCCAGGC
GGAAGTCGGCATCAAGGCCTATGTCGGCGAGCACACCCGGCTGAACGCGGCGGTGTTCCAGATCCGCACCGAGGACGAGA
TCGTCGTCGCCTCGTCGGTGGGCGGCCGTACCAGCTACACCAACGCCGGCACCACGCTGCGCCGCGGTCTGGAACTGGCC
GCAGAGACCAACTTCACCCACAACCTGTCGGCCCGCGGCGCGCTTACCGTGATGCGGGCGGTGTATGACGAAACCACCGC
CACGGTGGAAGACGGCAAGCGCATCCCCGGCATCCCGGCGGTCACCGCCTACGGCGAACTCGCGTGGAAGCCGCTCGCCG
GCCTCACCACCGCGGTCGAGGCCATCCACCGCAGCAAGGTCTATGTGGACGACGCCAACGCCGACCACGCCGCACCGGCC
TACACGCTGGTCAACCTGCGCCTGGCCGCCGAGCAGAAATCCGGCCCCTGGACCTTCAGCGAATTGCTGCGGCTGGACAA
CCTGTTCGACCGCGAGCACATCGCGTCGGTCATCGTCGGGGACCGCAATGGCCGCTACTACGAACCCGGACCGGGCCGCA
GCCTGTATGGTGGCGTGCGTGTGAGCTACCAGTTCTAA

Upstream 100 bases:

>100_bases
CGCTTTGACCGATGCCCGTCTCGGGGCGCCGCATTAGACTGCGGCCAAACGCTGCCGCGAGTGCGGCGGCCCATCACAAG
ACTGGAGACGAGAGGCCATC

Downstream 100 bases:

>100_bases
GACGCATGCCCCTTGCCCAACGCGCGGCGCCGCGGCCTTCCTGGCCGCGCGCCGCGTTTGTCCGCCTGCTGCCGCGCGCG
GCCCTGTTCGCCGCCGCGCT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MTRPARRTRGARPHTLAPLAAALLGALASLPAMAQETAPTQVLAPTVITGSRVEASSFDLPYSVDSVSLGADSAAGLRVN
VSEVMNAVPGVVVQNRQNYAQDLQISVRGFGARAAFGVRGVKLIADGIPATNPDGQGQAATFNLDTAERIEVLRGPMATI
YGNHAGGVIQLFSREGQGAPRVSAGVFGGDHGTVKVDIGAEGEKNGIGYVLDASHFETDGERRYSAAERNQAYAKLTFRP
DEDSKLNLIFSSLRQPETEDPLGLTWATWKRDETAVENVALQYRTRKEIDHVQGGATYERRFGSDRLQVQAYAGERSVTQ
YQSIPRAAQTPITHAGGVIDFDREFYGVGARYIADREIGPGRLTLTAGIDYDRSEDDRQGYQNFIGTVLGVKGALRRDEI
DTVTSTDPYVQAVWRQGDFDWTLGVRHSEVKFDVDDKFIVGANRDDSGSVSYHQTSPAVGVLWRLTPVLNLYASYGRGFE
TPTLNELSYSASGGFNFDLKPARSRQAEVGIKAYVGEHTRLNAAVFQIRTEDEIVVASSVGGRTSYTNAGTTLRRGLELA
AETNFTHNLSARGALTVMRAVYDETTATVEDGKRIPGIPAVTAYGELAWKPLAGLTTAVEAIHRSKVYVDDANADHAAPA
YTLVNLRLAAEQKSGPWTFSELLRLDNLFDREHIASVIVGDRNGRYYEPGPGRSLYGGVRVSYQF

Sequences:

>Translated_705_residues
MTRPARRTRGARPHTLAPLAAALLGALASLPAMAQETAPTQVLAPTVITGSRVEASSFDLPYSVDSVSLGADSAAGLRVN
VSEVMNAVPGVVVQNRQNYAQDLQISVRGFGARAAFGVRGVKLIADGIPATNPDGQGQAATFNLDTAERIEVLRGPMATI
YGNHAGGVIQLFSREGQGAPRVSAGVFGGDHGTVKVDIGAEGEKNGIGYVLDASHFETDGERRYSAAERNQAYAKLTFRP
DEDSKLNLIFSSLRQPETEDPLGLTWATWKRDETAVENVALQYRTRKEIDHVQGGATYERRFGSDRLQVQAYAGERSVTQ
YQSIPRAAQTPITHAGGVIDFDREFYGVGARYIADREIGPGRLTLTAGIDYDRSEDDRQGYQNFIGTVLGVKGALRRDEI
DTVTSTDPYVQAVWRQGDFDWTLGVRHSEVKFDVDDKFIVGANRDDSGSVSYHQTSPAVGVLWRLTPVLNLYASYGRGFE
TPTLNELSYSASGGFNFDLKPARSRQAEVGIKAYVGEHTRLNAAVFQIRTEDEIVVASSVGGRTSYTNAGTTLRRGLELA
AETNFTHNLSARGALTVMRAVYDETTATVEDGKRIPGIPAVTAYGELAWKPLAGLTTAVEAIHRSKVYVDDANADHAAPA
YTLVNLRLAAEQKSGPWTFSELLRLDNLFDREHIASVIVGDRNGRYYEPGPGRSLYGGVRVSYQF
>Mature_704_residues
TRPARRTRGARPHTLAPLAAALLGALASLPAMAQETAPTQVLAPTVITGSRVEASSFDLPYSVDSVSLGADSAAGLRVNV
SEVMNAVPGVVVQNRQNYAQDLQISVRGFGARAAFGVRGVKLIADGIPATNPDGQGQAATFNLDTAERIEVLRGPMATIY
GNHAGGVIQLFSREGQGAPRVSAGVFGGDHGTVKVDIGAEGEKNGIGYVLDASHFETDGERRYSAAERNQAYAKLTFRPD
EDSKLNLIFSSLRQPETEDPLGLTWATWKRDETAVENVALQYRTRKEIDHVQGGATYERRFGSDRLQVQAYAGERSVTQY
QSIPRAAQTPITHAGGVIDFDREFYGVGARYIADREIGPGRLTLTAGIDYDRSEDDRQGYQNFIGTVLGVKGALRRDEID
TVTSTDPYVQAVWRQGDFDWTLGVRHSEVKFDVDDKFIVGANRDDSGSVSYHQTSPAVGVLWRLTPVLNLYASYGRGFET
PTLNELSYSASGGFNFDLKPARSRQAEVGIKAYVGEHTRLNAAVFQIRTEDEIVVASSVGGRTSYTNAGTTLRRGLELAA
ETNFTHNLSARGALTVMRAVYDETTATVEDGKRIPGIPAVTAYGELAWKPLAGLTTAVEAIHRSKVYVDDANADHAAPAY
TLVNLRLAAEQKSGPWTFSELLRLDNLFDREHIASVIVGDRNGRYYEPGPGRSLYGGVRVSYQF

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=675, Percent_Identity=41.3333333333333, Blast_Score=489, Evalue=1e-139,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 76495; Mature: 76364

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPARRTRGARPHTLAPLAAALLGALASLPAMAQETAPTQVLAPTVITGSRVEASSFDL
CCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCEEECCEEEECCCEECCCCCC
PYSVDSVSLGADSAAGLRVNVSEVMNAVPGVVVQNRQNYAQDLQISVRGFGARAAFGVRG
CCCCCCEECCCCCCCCEEEEHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCHHHHCCCC
VKLIADGIPATNPDGQGQAATFNLDTAERIEVLRGPMATIYGNHAGGVIQLFSREGQGAP
EEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEECCCCCCEEEEEECCCCCCC
RVSAGVFGGDHGTVKVDIGAEGEKNGIGYVLDASHFETDGERRYSAAERNQAYAKLTFRP
CEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCEEEEEEECC
DEDSKLNLIFSSLRQPETEDPLGLTWATWKRDETAVENVALQYRTRKEIDHVQGGATYER
CCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RFGSDRLQVQAYAGERSVTQYQSIPRAAQTPITHAGGVIDFDREFYGVGARYIADREIGP
HCCCCCEEEEEECCCCHHHHHHHCCHHHCCCCCCCCCEEEECCHHHCCCCEEEECCCCCC
GRLTLTAGIDYDRSEDDRQGYQNFIGTVLGVKGALRRDEIDTVTSTDPYVQAVWRQGDFD
CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC
WTLGVRHSEVKFDVDDKFIVGANRDDSGSVSYHQTSPAVGVLWRLTPVLNLYASYGRGFE
EEECCEECEEEEECCCCEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
TPTLNELSYSASGGFNFDLKPARSRQAEVGIKAYVGEHTRLNAAVFQIRTEDEIVVASSV
CCCCCCCEECCCCCCCCCCCCCCCCCHHCCEEEEECCCCEEEEEEEEEECCCCEEEEECC
GGRTSYTNAGTTLRRGLELAAETNFTHNLSARGALTVMRAVYDETTATVEDGKRIPGIPA
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCC
VTAYGELAWKPLAGLTTAVEAIHRSKVYVDDANADHAAPAYTLVNLRLAAEQKSGPWTFS
EECCCCHHCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCHH
ELLRLDNLFDREHIASVIVGDRNGRYYEPGPGRSLYGGVRVSYQF
HHHHHHHHHCHHHHHEEEEECCCCCEECCCCCCCEECCEEEEEEC
>Mature Secondary Structure 
TRPARRTRGARPHTLAPLAAALLGALASLPAMAQETAPTQVLAPTVITGSRVEASSFDL
CCCCCHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCEEECCEEEECCCEECCCCCC
PYSVDSVSLGADSAAGLRVNVSEVMNAVPGVVVQNRQNYAQDLQISVRGFGARAAFGVRG
CCCCCCEECCCCCCCCEEEEHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCHHHHCCCC
VKLIADGIPATNPDGQGQAATFNLDTAERIEVLRGPMATIYGNHAGGVIQLFSREGQGAP
EEEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEECCCCCCEEEEEECCCCCCC
RVSAGVFGGDHGTVKVDIGAEGEKNGIGYVLDASHFETDGERRYSAAERNQAYAKLTFRP
CEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCEEEEEEECC
DEDSKLNLIFSSLRQPETEDPLGLTWATWKRDETAVENVALQYRTRKEIDHVQGGATYER
CCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RFGSDRLQVQAYAGERSVTQYQSIPRAAQTPITHAGGVIDFDREFYGVGARYIADREIGP
HCCCCCEEEEEECCCCHHHHHHHCCHHHCCCCCCCCCEEEECCHHHCCCCEEEECCCCCC
GRLTLTAGIDYDRSEDDRQGYQNFIGTVLGVKGALRRDEIDTVTSTDPYVQAVWRQGDFD
CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC
WTLGVRHSEVKFDVDDKFIVGANRDDSGSVSYHQTSPAVGVLWRLTPVLNLYASYGRGFE
EEECCEECEEEEECCCCEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
TPTLNELSYSASGGFNFDLKPARSRQAEVGIKAYVGEHTRLNAAVFQIRTEDEIVVASSV
CCCCCCCEECCCCCCCCCCCCCCCCCHHCCEEEEECCCCEEEEEEEEEECCCCEEEEECC
GGRTSYTNAGTTLRRGLELAAETNFTHNLSARGALTVMRAVYDETTATVEDGKRIPGIPA
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCC
VTAYGELAWKPLAGLTTAVEAIHRSKVYVDDANADHAAPAYTLVNLRLAAEQKSGPWTFS
EECCCCHHCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCHH
ELLRLDNLFDREHIASVIVGDRNGRYYEPGPGRSLYGGVRVSYQF
HHHHHHHHHCHHHHHEEEEECCCCCEECCCCCCCEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]