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The map label for this gene is yhjC [C]

Identifier: 119899157

GI number: 119899157

Start: 3147200

End: 3148141

Strand: Reverse

Name: yhjC [C]

Synonym: azo2867

Alternate gene names: 119899157

Gene position: 3148141-3147200 (Counterclockwise)

Preceding gene: 119899164

Following gene: 119899153

Centisome position: 71.94

GC content: 72.08

Gene sequence:

>942_bases
ATGGATCGGTTTCGTGAACTCAGCGTCTTCGTGGCCGTGGTCGATGCCGGCAGCTTCGTCGGCGCCGGCGACGCGCTGCG
GATTTCCAAGGCCGCGGTGTCGCGCTGCGTGCAGGACCTGGAAGCCCGGCTCGGCGCGCGCCTGCTCCAGCGCACCACGC
GGCGCCTGTCGCTGACCGAGGCGGGGCGCGCGTACTACGCCCGCGCGCGCCAGCTGCTGGCGGATCTGGACGAAGCCGAC
GGCGCGGTCGGCGCGGTGACCGGGCAGCCGGTCGGCCGCCTGCAGGTGAATGCGCCGCTGTCCTTCGGCGTGCGCTACCT
GGCGCCGCTGTGGGGCGACTTCCTCGCCCGCTATCCCGGCATCGAACTCGACGTGTCCCTGTCGGACCGCATGGTGGATC
TGGTGGATGAGGGTTACGACCTCGCGCTGCGCATCACCCGGCTGCAGGATTCGTCGCTGGTGTCGCGCCAGCTCGCCACC
ACCCGCATCGTCATGTGCGCCGCGCCGGCCTACCTTGCGCAGCATCCCGCCCCGCAGCGCCTCGCCGACATCGCCCACCA
CGCCGTCATCGCCTACAGCTATGCGCAGAGCGGCGATGTGTGGCGCTTCGTCGGGCCGCAGGGGGTGGAGGAGGAGGTGC
AGACCCGGCCGCGTTTCCGCGCCAACAACGGCGACACCTGCCGCGCGGCGGCGCTGGCCGGGCAGGGCATCGTGATGCAG
CCGACCTTCCTGGTGGGCGACGACCTGGCCGCGGGGCGGCTGCTGCGGGTGCTGCCGGAATACGGCGGCGTGGAGGTCGG
CATCCACGCGGTGTATCCGTCGCGCAAGCACCTGTCGCTGAAGGTGAGGGTGCTGCTGGATTACCTGGCGGCGGCTTTCG
CCACCGTGCCGTGGGCGGAGTGTGAGGCGGTGGAGCGCGCGCGGGGCCGGTTGAGGCCCTAG

Upstream 100 bases:

>100_bases
GCATCGGGCCGGCGTCGATGAAGGCACTTTATTGAAACCCAAGATGGCGATAAATCCGTCTTCAATTGACAGACTGTCAA
ACGGGTGAGAACAATCTTTC

Downstream 100 bases:

>100_bases
GCGGCCGAGGCCGCGCTGTCTTCGCCAGCCACCGCGACGCGGCCCTTGCCGCTGCGCTTGGCCGCGTACATCGCACGGTC
AGCCGCGGTGAGCAGGCTGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDRFRELSVFVAVVDAGSFVGAGDALRISKAAVSRCVQDLEARLGARLLQRTTRRLSLTEAGRAYYARARQLLADLDEAD
GAVGAVTGQPVGRLQVNAPLSFGVRYLAPLWGDFLARYPGIELDVSLSDRMVDLVDEGYDLALRITRLQDSSLVSRQLAT
TRIVMCAAPAYLAQHPAPQRLADIAHHAVIAYSYAQSGDVWRFVGPQGVEEEVQTRPRFRANNGDTCRAAALAGQGIVMQ
PTFLVGDDLAAGRLLRVLPEYGGVEVGIHAVYPSRKHLSLKVRVLLDYLAAAFATVPWAECEAVERARGRLRP

Sequences:

>Translated_313_residues
MDRFRELSVFVAVVDAGSFVGAGDALRISKAAVSRCVQDLEARLGARLLQRTTRRLSLTEAGRAYYARARQLLADLDEAD
GAVGAVTGQPVGRLQVNAPLSFGVRYLAPLWGDFLARYPGIELDVSLSDRMVDLVDEGYDLALRITRLQDSSLVSRQLAT
TRIVMCAAPAYLAQHPAPQRLADIAHHAVIAYSYAQSGDVWRFVGPQGVEEEVQTRPRFRANNGDTCRAAALAGQGIVMQ
PTFLVGDDLAAGRLLRVLPEYGGVEVGIHAVYPSRKHLSLKVRVLLDYLAAAFATVPWAECEAVERARGRLRP
>Mature_313_residues
MDRFRELSVFVAVVDAGSFVGAGDALRISKAAVSRCVQDLEARLGARLLQRTTRRLSLTEAGRAYYARARQLLADLDEAD
GAVGAVTGQPVGRLQVNAPLSFGVRYLAPLWGDFLARYPGIELDVSLSDRMVDLVDEGYDLALRITRLQDSSLVSRQLAT
TRIVMCAAPAYLAQHPAPQRLADIAHHAVIAYSYAQSGDVWRFVGPQGVEEEVQTRPRFRANNGDTCRAAALAGQGIVMQ
PTFLVGDDLAAGRLLRVLPEYGGVEVGIHAVYPSRKHLSLKVRVLLDYLAAAFATVPWAECEAVERARGRLRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=34.3333333333333, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=33.1081081081081, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=32.3232323232323, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=34.2465753424658, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=30.2083333333333, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=29.020979020979, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787589, Length=287, Percent_Identity=26.4808362369338, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789173, Length=267, Percent_Identity=28.0898876404494, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788706, Length=276, Percent_Identity=27.8985507246377, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790011, Length=295, Percent_Identity=23.3898305084746, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI157672245, Length=121, Percent_Identity=34.7107438016529, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786448, Length=290, Percent_Identity=24.8275862068966, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788481, Length=297, Percent_Identity=25.5892255892256, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=145, Percent_Identity=31.7241379310345, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787601, Length=135, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787879, Length=156, Percent_Identity=31.4102564102564, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34112; Mature: 34112

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFRELSVFVAVVDAGSFVGAGDALRISKAAVSRCVQDLEARLGARLLQRTTRRLSLTE
CCCHHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGRAYYARARQLLADLDEADGAVGAVTGQPVGRLQVNAPLSFGVRYLAPLWGDFLARYPG
HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC
IELDVSLSDRMVDLVDEGYDLALRITRLQDSSLVSRQLATTRIVMCAAPAYLAQHPAPQR
CEEEECHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHCCCCHHH
LADIAHHAVIAYSYAQSGDVWRFVGPQGVEEEVQTRPRFRANNGDTCRAAALAGQGIVMQ
HHHHHHHHHHEEEECCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEC
PTFLVGDDLAAGRLLRVLPEYGGVEVGIHAVYPSRKHLSLKVRVLLDYLAAAFATVPWAE
CCEEECCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHH
CEAVERARGRLRP
HHHHHHHHCCCCC
>Mature Secondary Structure
MDRFRELSVFVAVVDAGSFVGAGDALRISKAAVSRCVQDLEARLGARLLQRTTRRLSLTE
CCCHHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGRAYYARARQLLADLDEADGAVGAVTGQPVGRLQVNAPLSFGVRYLAPLWGDFLARYPG
HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC
IELDVSLSDRMVDLVDEGYDLALRITRLQDSSLVSRQLATTRIVMCAAPAYLAQHPAPQR
CEEEECHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHCCCCHHH
LADIAHHAVIAYSYAQSGDVWRFVGPQGVEEEVQTRPRFRANNGDTCRAAALAGQGIVMQ
HHHHHHHHHHEEEECCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEC
PTFLVGDDLAAGRLLRVLPEYGGVEVGIHAVYPSRKHLSLKVRVLLDYLAAAFATVPWAE
CCEEECCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHH
CEAVERARGRLRP
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]