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The map label for this gene is comF [H]

Identifier: 119899106

GI number: 119899106

Start: 3095879

End: 3096571

Strand: Reverse

Name: comF [H]

Synonym: azo2816

Alternate gene names: 119899106

Gene position: 3096571-3095879 (Counterclockwise)

Preceding gene: 119899110

Following gene: 119899105

Centisome position: 70.76

GC content: 70.42

Gene sequence:

>693_bases
TTGTTGCGGCTGCTGGATTTCGTCGTCGATGCGCTGATCCCGCAGGACTGCTTCCTGTGCGGGGCGCCCGCTGCCGGGCG
GGCCATCTGCACGGCATGCGAGGCCGAACTGCCCGGCGCGCCCGCGCAGGCCTGCCCGTGCTGCGCGGTGCCGGTCGCAA
GTGGAGGGCGCTGCGGCGAGTGTCTTCAGCACCCGCCCGCGTTCGATTCGACGGTGGCGCTGTTCGCGTTCGCGTTTCCG
GTCGATCGGATGGTGCACGCCCTCAAGTACCGGCACCGCCTCGGGTTGGCGGACTACTTCGCGGCGGTGGCGTTGCGGCG
GGGTTTGCCGCCGGACATCGACATGGTGCTACCGATGCCGTTGCATCCGGCCCGGCTGGCCGAGCGGGGTTTCAATCAGT
CGGTGGAGATCGCACGGCCGCTGGCGCGGGCGCTCGGCGTGGGGCTGGAACTGTCGGCACTCAAACGGGTGCGGAACATT
CCCACGCAGTCGGGGCTGAGCCGTGAGGAGCGGCAGCGCAACGTGCGTGGCGCATTCGATTCTGCGACCGACCTGCGCGG
ACGGCGCGTGCTGGTGCTCGACGACGTGATGACCACCGGCGCCACGTTGGGCGAAGCGGCGCGCATTCTCAAGCGGCGGG
GTGCGGAGCGGGTCGACAATCTCGTCATCGCCCGCACACCCCCGCCGGGCTGA

Upstream 100 bases:

>100_bases
GGGCGGTCAAGGTCGTTGTCATAACTCGGTTTCCGGACTCTAATGCGAAGCCCGACATGTTCATTCATCGCTCGAAAGCT
TGTCAAATCAACCCAAGACC

Downstream 100 bases:

>100_bases
GCTACAGTGCGCGCTTTCCGCGCCGCGGAAGCACGACAGCGCGCCATGTTCCACATCATCCTGTTCGAACCCGAAATTCC
GCCGAACACCGGCAACATCA

Product: putative competence protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MLRLLDFVVDALIPQDCFLCGAPAAGRAICTACEAELPGAPAQACPCCAVPVASGGRCGECLQHPPAFDSTVALFAFAFP
VDRMVHALKYRHRLGLADYFAAVALRRGLPPDIDMVLPMPLHPARLAERGFNQSVEIARPLARALGVGLELSALKRVRNI
PTQSGLSREERQRNVRGAFDSATDLRGRRVLVLDDVMTTGATLGEAARILKRRGAERVDNLVIARTPPPG

Sequences:

>Translated_230_residues
MLRLLDFVVDALIPQDCFLCGAPAAGRAICTACEAELPGAPAQACPCCAVPVASGGRCGECLQHPPAFDSTVALFAFAFP
VDRMVHALKYRHRLGLADYFAAVALRRGLPPDIDMVLPMPLHPARLAERGFNQSVEIARPLARALGVGLELSALKRVRNI
PTQSGLSREERQRNVRGAFDSATDLRGRRVLVLDDVMTTGATLGEAARILKRRGAERVDNLVIARTPPPG
>Mature_230_residues
MLRLLDFVVDALIPQDCFLCGAPAAGRAICTACEAELPGAPAQACPCCAVPVASGGRCGECLQHPPAFDSTVALFAFAFP
VDRMVHALKYRHRLGLADYFAAVALRRGLPPDIDMVLPMPLHPARLAERGFNQSVEIARPLARALGVGLELSALKRVRNI
PTQSGLSREERQRNVRGAFDSATDLRGRRVLVLDDVMTTGATLGEAARILKRRGAERVDNLVIARTPPPG

Specific function: Could be involved in gluconate metabolism [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=224, Percent_Identity=33.4821428571429, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 24712; Mature: 24712

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLLDFVVDALIPQDCFLCGAPAAGRAICTACEAELPGAPAQACPCCAVPVASGGRCGE
CHHHHHHHHHHHCCHHHHEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
CLQHPPAFDSTVALFAFAFPVDRMVHALKYRHRLGLADYFAAVALRRGLPPDIDMVLPMP
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEECCC
LHPARLAERGFNQSVEIARPLARALGVGLELSALKRVRNIPTQSGLSREERQRNVRGAFD
CCHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
SATDLRGRRVLVLDDVMTTGATLGEAARILKRRGAERVDNLVIARTPPPG
CHHCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHCHHHHHCEEEECCCCCC
>Mature Secondary Structure
MLRLLDFVVDALIPQDCFLCGAPAAGRAICTACEAELPGAPAQACPCCAVPVASGGRCGE
CHHHHHHHHHHHCCHHHHEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
CLQHPPAFDSTVALFAFAFPVDRMVHALKYRHRLGLADYFAAVALRRGLPPDIDMVLPMP
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEECCC
LHPARLAERGFNQSVEIARPLARALGVGLELSALKRVRNIPTQSGLSREERQRNVRGAFD
CCHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
SATDLRGRRVLVLDDVMTTGATLGEAARILKRRGAERVDNLVIARTPPPG
CHHCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHCHHHHHCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]