Click here to switch to the map view.

The map label for this gene is 119899087

Identifier: 119899087

GI number: 119899087

Start: 3080591

End: 3081184

Strand: Reverse

Name: 119899087

Synonym: azo2797

Alternate gene names: NA

Gene position: 3081184-3080591 (Counterclockwise)

Preceding gene: 119899094

Following gene: 119899086

Centisome position: 70.41

GC content: 62.46

Gene sequence:

>594_bases
GTGTCCTTCCTGCTGAGTCTTTCCCGGTTGATCGACTGGATCAACGAACGGGTAGGACGTAGCGTGATGTGGCTCGTGCT
GATCGCCGTAGTGATCAGCGCGGGAAACGCGCTCGTCCGCAAGCTGTTTAACACAAGTTCCAACGCGCTTCTCGAAATTC
AGTGGTACCTGTTCGCGGCCATCTTCATGCTCGCCGCGGGCTACACCTTCCTGCGCAACGAGCACGTGCGCATCGATGTG
ATCACCGGGCGACTGTCGCCGCGGGGGCAGAACATCGTGGACATCATCGGCATCGCGCTCTTCATGCTGCCGATGGCGGT
GCTGCTGTTGTGGCTGTCGCTGCCGATCGTGAAGCTTTCCATCGTGTCGGGCGAGATGTCCGCCAACCCCGGCGGCCTGA
TCCGCTGGCCGGTCAAGCTGATGCTGCCGCTGGGCATGTTCTTCCTGATCCTGCAGGCGCTGTCCGAACTCATCAAGCGC
ATCGCCTTCCTCACCGGGCATGGCCCCAACGTGCTGGTCAAGCACGGTGCGCCTTCCGCCGAGGAAGAGCTGGCCGCCGC
GATCAAGCAGCAGGCCCCGGGAGGTGCGCAATGA

Upstream 100 bases:

>100_bases
AAGCCCTTGGCCTCTATGGAATAATCCGGCCACCGCAAGGGCCGGCGGACGATAAGCCGGACCGGCGCCCTGCATTCGTC
GTCCTCCAAAGGAGTCCTTC

Downstream 100 bases:

>100_bases
CCGAGTTCCTGATCGCCAACATGGCGCCGGTGATGTTCGCGGCGCTGGTGTTCTTCCTGCTGATGGGCTTTCCGGTCGCA
TTCGCGCTCGCGGCCAACGG

Product: putative small permease of TRAP-type transporter

Products: NA

Alternate protein names: TRAP Transporter DctQ-Like Membrane Protein; C4-Dicarboxylate Transporter Family Protein DctQ Subunit; TRAP-Type Transporter Small Permease Component; Tripartite Transporter Small Subunit; TRAP-T Family Tripartite Transporter; Mannitol Transporter; TRAP-Type Transport System Small Permease Component; C4-Dicarboxylate Transporter Permease; Tripartite ATP-Independent Periplasmic Transporter; TRAP Mannitol/C4-Dicarboxylate Transporter; Permease Component Of C4 Dicarboxylate Transporter; TRAP Transporter DctQ Family Protein; Transmembrane Transporter Component; TRAP C4-Dicarboxylate Transport System DctQ Subunit; TRAP Dicarboxylate Family Transporter DctQ Subunit; Small Permease Of TRAP-Type Transporter; Trap Dicarboxylate Transporter Dctm Subunit; Trap-Type Transport System Small Permease Component; TRAP Dicarboxylate Transporter; TRAP-Type Large Permease Component; TRAP Transporter Small Transmembrane Protein; Transporter DctQ Related Transmembrane Protein; TRAP Transporter DctQ-Like Membrane Protein Family; Triosephosphate Isomerase (TIM; TRAP Transporter Small Subunit; TRAP Dicarboxylate Transporter DctQ Subunit; Tripartite ATP-Independent Periplasmic Protein; Permease Protein; Tripartite ATP-Independent Periplasmic; C4-Dicarboxylate Transporter Small Subunit

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSFLLSLSRLIDWINERVGRSVMWLVLIAVVISAGNALVRKLFNTSSNALLEIQWYLFAAIFMLAAGYTFLRNEHVRIDV
ITGRLSPRGQNIVDIIGIALFMLPMAVLLLWLSLPIVKLSIVSGEMSANPGGLIRWPVKLMLPLGMFFLILQALSELIKR
IAFLTGHGPNVLVKHGAPSAEEELAAAIKQQAPGGAQ

Sequences:

>Translated_197_residues
MSFLLSLSRLIDWINERVGRSVMWLVLIAVVISAGNALVRKLFNTSSNALLEIQWYLFAAIFMLAAGYTFLRNEHVRIDV
ITGRLSPRGQNIVDIIGIALFMLPMAVLLLWLSLPIVKLSIVSGEMSANPGGLIRWPVKLMLPLGMFFLILQALSELIKR
IAFLTGHGPNVLVKHGAPSAEEELAAAIKQQAPGGAQ
>Mature_196_residues
SFLLSLSRLIDWINERVGRSVMWLVLIAVVISAGNALVRKLFNTSSNALLEIQWYLFAAIFMLAAGYTFLRNEHVRIDVI
TGRLSPRGQNIVDIIGIALFMLPMAVLLLWLSLPIVKLSIVSGEMSANPGGLIRWPVKLMLPLGMFFLILQALSELIKRI
AFLTGHGPNVLVKHGAPSAEEELAAAIKQQAPGGAQ

Specific function: Unknown

COG id: COG4665

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21598; Mature: 21467

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLLSLSRLIDWINERVGRSVMWLVLIAVVISAGNALVRKLFNTSSNALLEIQWYLFAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEHHHHHHHH
IFMLAAGYTFLRNEHVRIDVITGRLSPRGQNIVDIIGIALFMLPMAVLLLWLSLPIVKLS
HHHHHHCHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVSGEMSANPGGLIRWPVKLMLPLGMFFLILQALSELIKRIAFLTGHGPNVLVKHGAPSA
EECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
EEELAAAIKQQAPGGAQ
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SFLLSLSRLIDWINERVGRSVMWLVLIAVVISAGNALVRKLFNTSSNALLEIQWYLFAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEHHHHHHHH
IFMLAAGYTFLRNEHVRIDVITGRLSPRGQNIVDIIGIALFMLPMAVLLLWLSLPIVKLS
HHHHHHCHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVSGEMSANPGGLIRWPVKLMLPLGMFFLILQALSELIKRIAFLTGHGPNVLVKHGAPSA
EECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
EEELAAAIKQQAPGGAQ
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA