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The map label for this gene is ycgR

Identifier: 119899001

GI number: 119899001

Start: 2992357

End: 2993136

Strand: Direct

Name: ycgR

Synonym: azo2711

Alternate gene names: 119899001

Gene position: 2992357-2993136 (Clockwise)

Preceding gene: 119899000

Following gene: 119899002

Centisome position: 68.38

GC content: 65.38

Gene sequence:

>780_bases
ATGTCCAACCAGAACGACGATACCCGGGTCGATCTCCTCGGCTCCGACGATTTCGAGAAATATCTGCTCTACGGCAGCCG
CGAAATCCGCCAGATCCTGCAGGGCCTGATCGATCACCATGCCCTGATCACGGCGCAGACGGTGCCCGGTCATCAGTCCT
TCCTGACCACGGTCGTCGCGCTTCCGGACGATGGCGCCTCGATCATCATCGACGCCGGGCCGGACGAGCACATCAATCAG
CGCGTGGGCAACGCGGAACGCCTGGTGTGCATGAGCCAGCTCGACAAGATCCGCATCCAGTTCGACCTGTCAGCGCCGGC
GCTCACCCGCTACGAAAACCGGCCTGCGTTCCGCGCCCCGGTCCCTGCGCAGTTGCTGCGCCTGCAACGGCGTGAGTTCT
ACCGCCTGCAGACCCCGGTCACGCACACCGTCACCTGCCGCATTCCGCTGCCGCAGCCCGACGGACGTACGCTGGAACTC
GAAACCAGGGTCATCGACATCAGCGGCGGCGGCATCGCCGTGGTGGTGCCGCCGGACAACGTTCCGTTCGGCGCGGACAT
GGAGTTCGAGAACTGCAAGCTCACCTTGCCCGAACTCGGCACCATCCCGGTCCGGCTCAAGGTCCGCAACCTGTTCCGCC
TCACCAACCGCAACGGCGTCGAGATGCTGCGTGCCGGCTGCGAGTTCGTCGATCTGCCGCGCAGCGCCGACAACGCGATC
CAGCGCTACATCTTCAAGGTCGAGCGCGACCGCAGCGCACGCGAACGCGGCCGCCTCTAA

Upstream 100 bases:

>100_bases
GAGCCACCCTGTCTTCACCAGGGGCATGGCCCCGAAGGCAGCCCTCGTGCTATAAACGCCAGCGCCTTAAACCCAGGCTC
CATCTCTGCAGATTCACGGC

Downstream 100 bases:

>100_bases
AGCGCGCCGTAGCGCCTCCGTGCGCTTTTTCATACAACCTTAGTTATACATCTAAGGTATTATTCCTCTACCGGAAGACA
GCCTTCTGGCGCCCCCGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MSNQNDDTRVDLLGSDDFEKYLLYGSREIRQILQGLIDHHALITAQTVPGHQSFLTTVVALPDDGASIIIDAGPDEHINQ
RVGNAERLVCMSQLDKIRIQFDLSAPALTRYENRPAFRAPVPAQLLRLQRREFYRLQTPVTHTVTCRIPLPQPDGRTLEL
ETRVIDISGGGIAVVVPPDNVPFGADMEFENCKLTLPELGTIPVRLKVRNLFRLTNRNGVEMLRAGCEFVDLPRSADNAI
QRYIFKVERDRSARERGRL

Sequences:

>Translated_259_residues
MSNQNDDTRVDLLGSDDFEKYLLYGSREIRQILQGLIDHHALITAQTVPGHQSFLTTVVALPDDGASIIIDAGPDEHINQ
RVGNAERLVCMSQLDKIRIQFDLSAPALTRYENRPAFRAPVPAQLLRLQRREFYRLQTPVTHTVTCRIPLPQPDGRTLEL
ETRVIDISGGGIAVVVPPDNVPFGADMEFENCKLTLPELGTIPVRLKVRNLFRLTNRNGVEMLRAGCEFVDLPRSADNAI
QRYIFKVERDRSARERGRL
>Mature_258_residues
SNQNDDTRVDLLGSDDFEKYLLYGSREIRQILQGLIDHHALITAQTVPGHQSFLTTVVALPDDGASIIIDAGPDEHINQR
VGNAERLVCMSQLDKIRIQFDLSAPALTRYENRPAFRAPVPAQLLRLQRREFYRLQTPVTHTVTCRIPLPQPDGRTLELE
TRVIDISGGGIAVVVPPDNVPFGADMEFENCKLTLPELGTIPVRLKVRNLFRLTNRNGVEMLRAGCEFVDLPRSADNAIQ
RYIFKVERDRSARERGRL

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCGR_AZOSB (A1K922)

Other databases:

- EMBL:   AM406670
- RefSeq:   YP_934214.1
- ProteinModelPortal:   A1K922
- STRING:   A1K922
- GeneID:   4607588
- GenomeReviews:   AM406670_GR
- KEGG:   azo:azo2711
- eggNOG:   COG5581
- HOGENOM:   HBG700691
- OMA:   QLGFRFL
- ProtClustDB:   CLSK2533342
- BioCyc:   ASP62928:AZO2711-MONOMER
- HAMAP:   MF_01457
- InterPro:   IPR009875
- InterPro:   IPR009926

Pfam domain/function: PF07238 PilZ; PF07317 YcgR

EC number: NA

Molecular weight: Translated: 29236; Mature: 29105

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQNDDTRVDLLGSDDFEKYLLYGSREIRQILQGLIDHHALITAQTVPGHQSFLTTVVA
CCCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCHHEEEEEEE
LPDDGASIIIDAGPDEHINQRVGNAERLVCMSQLDKIRIQFDLSAPALTRYENRPAFRAP
ECCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHCCEEEEEEECCCCHHHHHCCCCCCCCC
VPAQLLRLQRREFYRLQTPVTHTVTCRIPLPQPDGRTLELETRVIDISGGGIAVVVPPDN
CCHHHHHHHHHHHEEECCCCEEEEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEECCCC
VPFGADMEFENCKLTLPELGTIPVRLKVRNLFRLTNRNGVEMLRAGCEFVDLPRSADNAI
CCCCCCCCCCCCEEECCCCCCEEEEEEEEHHHHHCCCCCHHHHHCCCCEEECCCCHHHHH
QRYIFKVERDRSARERGRL
HHHHHHHHCCCCHHHHCCC
>Mature Secondary Structure 
SNQNDDTRVDLLGSDDFEKYLLYGSREIRQILQGLIDHHALITAQTVPGHQSFLTTVVA
CCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCHHEEEEEEE
LPDDGASIIIDAGPDEHINQRVGNAERLVCMSQLDKIRIQFDLSAPALTRYENRPAFRAP
ECCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHCCEEEEEEECCCCHHHHHCCCCCCCCC
VPAQLLRLQRREFYRLQTPVTHTVTCRIPLPQPDGRTLELETRVIDISGGGIAVVVPPDN
CCHHHHHHHHHHHEEECCCCEEEEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEECCCC
VPFGADMEFENCKLTLPELGTIPVRLKVRNLFRLTNRNGVEMLRAGCEFVDLPRSADNAI
CCCCCCCCCCCCEEECCCCCCEEEEEEEEHHHHHCCCCCHHHHHCCCCEEECCCCHHHHH
QRYIFKVERDRSARERGRL
HHHHHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA