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The map label for this gene is yciR [C]

Identifier: 119898976

GI number: 119898976

Start: 2960329

End: 2962404

Strand: Direct

Name: yciR [C]

Synonym: azo2685

Alternate gene names: 119898976

Gene position: 2960329-2962404 (Clockwise)

Preceding gene: 119898974

Following gene: 119898977

Centisome position: 67.65

GC content: 67.15

Gene sequence:

>2076_bases
GTGACCGATACCTGTCTTCCCCCGGCCTCCCTCTCCCCATCCGCGGATGGCGCCGCGCCGCCCGCCGCAGCGCAGCGGCG
TCGCAAGCGCATCGACAGCTGGGCCGGCCTGACGATGGGGCCGCTGTTGCTCGTGACACTACTGGTGGCGGCGATCTGGG
CGGGACAGAGCGTCCATACCGAACGCGAACGCGCGCTTGCCATCCGCACCACCTTCTCCCATCAGGAAAGCGTGCTGCGG
ATGCTGGCCGCCGACGAAACCCCGGCCAACGGCATGGACGACCATGCCACCGACGAAAGCGCGCTGATCAACCAGTTGGC
GGCGCAGGTGGCCACCAACCCTGCCCTTGCCAGCACGCTCACGCTTCTCGACCCCGCCGGGCGGGTGCTTTGGACACCGG
CCTTTCGTCCTGCGCCCTCGCCGCAGGCAGCGCAGTTGCGCCCCGGCACGCCGGGTTCGTTGTCGCACTCCGTGGTCCCG
CTGGTGGGTGGCAACGCCCGCCTGGTCACGGAACTCGCCCTCCCCCACACCGGCCTGAGACTCCGCGCGACGCGCGAACT
CGACGAGGTGTTGGGCCTCCCGGATGCAGGGCGCAGCAACCTGCGCGGCTGGGGCTGGGGCGTAACGCTCGCGCTGATCG
CCGCGGCCGCCCTGCTCGCCTTCATCGGCCACCGCCAGCACCGCCTCTACCGGCAGTTGTGCCGCGCCGGCGACGAGAAC
CAACGCCTGATCGACCGCCTGCGGGACGAACGCTCGCGCGCTTATCAGCTTGCCTCGCACGATCACCTGACCGGTCTGCC
CAACCGGCTCTTGTTTACCGAACTGGCCAACAGCCACCTGTCGCGCGCACGGCGCAGCCATGCCCCGTTCGTGATGATGT
TTCTCGACCTCGACCGCTTCAAGCGCATCAACGACACCCTGGGCCACCGCGTGGGCGACCTGCTGCTGCAGGAAGTGGCC
CTCCGCCTGCGGCAGACAGTGCGTGAGACGGATATCGTCGCCCGCCTCGGTGGCGACGAGTTCGTGTTGCTGCTGACCGA
ACTCGACGCGCTCGACGACGCGAGCCGGGTCGCCCGCAAGCTGATCGAAGCGATCGGTCAGCCGATGGTGCTGGACGGCC
ATGAAATCGAAATGCGGCCCAGCGTTGGCATCGCAATCCATCCGCGCGACGGGATGGACGTGGAAGCGATGATGCGCAAC
GCGGATTCGGCAATGTACGAAGCCAAGCGGTCCGGCAGCGGGCGCTTTCACTACTACGATCCCTCGCTCAACTCGCGCTC
GTCGTTGCAACTGGATCTCAACGGCCGCTTCCGCCGCGCAATCCTCGGCAACGAGTTCGTCCTGCACTACCAGCCGCGCG
TCACGCTCAACGGCTTTCGCGTCACCAGCCTCGAAGCCTTGATCCGCTGGCAGCACCCGGAACGCGGGCTGGTGCCTCCG
GGCGAATTCATCGAATACGCGGAACAGGAAGGGCTGGTGGTCGAACTCGGCAACTGGGTGGTGCGCGAGGCCTGCCGACA
GATCGCGGCGTGGATTGCCGAGGGACTCGAGATCGTTCCGGTGGCGATCAACGTGTCGCCGAAGCAACTGCGCGACCACA
GCTTCGTCGAGGTGATCCGAGAGTCGGTCGCGCACTACGGCATCCGCCCCGCCCTGCTGGAAATCGAGATTACGGAGCGC
TGCGTGGTGGAAGACTTCGAGCGCCCGCGCGCCGCGCTGGAAACGCTGTCGGCGCTCGGCCTGAAGATCGCGCTCGACGA
CTACGGCACCGGCTTCAGCAGCCTGAGCTACCTCAAGCAACTGCCGATCGACATCATCAAGATCGACCGTTCCTTCATCA
GCGACATCCGCAACGCCCGGCACGACGCCGCCATCGTCGCCTCGACGATCGCCCTCGGCCACAACCTCGGTCTCACCGTC
ATCGCCGAAGGCGTGGAAACACGGGAGCAGGTCATCTACCTGCGGACAGCCGGCTGCGACGAAGTGCAGGGCTACTACTT
CCAGAAACCCGCCCCGCCAGACGCCATCCGTCCGCTGCTCGCAGCGGGAAGCCAGCCGATGACCGCAGCCGGATGA

Upstream 100 bases:

>100_bases
CCTGTCCTTCCCCGGCAAAACCACCGTCACACGGGCGCAACCTTGCCCGCGGACCATGCGCAACCGCTCCAGATTCGCGC
CCCTGCGCCCGCCTTTCCGC

Downstream 100 bases:

>100_bases
CGGCGCCAGGCACGGGGCGCCGGGCAGCACCGGCGCCGGGTCCAAAACGCCGCCGACCGAGAAACGCGCGGGGAAAAGCG
GGGAACGGTGATGGATCCAG

Product: GGDEF/EAL/PAS-domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 691; Mature: 690

Protein sequence:

>691_residues
MTDTCLPPASLSPSADGAAPPAAAQRRRKRIDSWAGLTMGPLLLVTLLVAAIWAGQSVHTERERALAIRTTFSHQESVLR
MLAADETPANGMDDHATDESALINQLAAQVATNPALASTLTLLDPAGRVLWTPAFRPAPSPQAAQLRPGTPGSLSHSVVP
LVGGNARLVTELALPHTGLRLRATRELDEVLGLPDAGRSNLRGWGWGVTLALIAAAALLAFIGHRQHRLYRQLCRAGDEN
QRLIDRLRDERSRAYQLASHDHLTGLPNRLLFTELANSHLSRARRSHAPFVMMFLDLDRFKRINDTLGHRVGDLLLQEVA
LRLRQTVRETDIVARLGGDEFVLLLTELDALDDASRVARKLIEAIGQPMVLDGHEIEMRPSVGIAIHPRDGMDVEAMMRN
ADSAMYEAKRSGSGRFHYYDPSLNSRSSLQLDLNGRFRRAILGNEFVLHYQPRVTLNGFRVTSLEALIRWQHPERGLVPP
GEFIEYAEQEGLVVELGNWVVREACRQIAAWIAEGLEIVPVAINVSPKQLRDHSFVEVIRESVAHYGIRPALLEIEITER
CVVEDFERPRAALETLSALGLKIALDDYGTGFSSLSYLKQLPIDIIKIDRSFISDIRNARHDAAIVASTIALGHNLGLTV
IAEGVETREQVIYLRTAGCDEVQGYYFQKPAPPDAIRPLLAAGSQPMTAAG

Sequences:

>Translated_691_residues
MTDTCLPPASLSPSADGAAPPAAAQRRRKRIDSWAGLTMGPLLLVTLLVAAIWAGQSVHTERERALAIRTTFSHQESVLR
MLAADETPANGMDDHATDESALINQLAAQVATNPALASTLTLLDPAGRVLWTPAFRPAPSPQAAQLRPGTPGSLSHSVVP
LVGGNARLVTELALPHTGLRLRATRELDEVLGLPDAGRSNLRGWGWGVTLALIAAAALLAFIGHRQHRLYRQLCRAGDEN
QRLIDRLRDERSRAYQLASHDHLTGLPNRLLFTELANSHLSRARRSHAPFVMMFLDLDRFKRINDTLGHRVGDLLLQEVA
LRLRQTVRETDIVARLGGDEFVLLLTELDALDDASRVARKLIEAIGQPMVLDGHEIEMRPSVGIAIHPRDGMDVEAMMRN
ADSAMYEAKRSGSGRFHYYDPSLNSRSSLQLDLNGRFRRAILGNEFVLHYQPRVTLNGFRVTSLEALIRWQHPERGLVPP
GEFIEYAEQEGLVVELGNWVVREACRQIAAWIAEGLEIVPVAINVSPKQLRDHSFVEVIRESVAHYGIRPALLEIEITER
CVVEDFERPRAALETLSALGLKIALDDYGTGFSSLSYLKQLPIDIIKIDRSFISDIRNARHDAAIVASTIALGHNLGLTV
IAEGVETREQVIYLRTAGCDEVQGYYFQKPAPPDAIRPLLAAGSQPMTAAG
>Mature_690_residues
TDTCLPPASLSPSADGAAPPAAAQRRRKRIDSWAGLTMGPLLLVTLLVAAIWAGQSVHTERERALAIRTTFSHQESVLRM
LAADETPANGMDDHATDESALINQLAAQVATNPALASTLTLLDPAGRVLWTPAFRPAPSPQAAQLRPGTPGSLSHSVVPL
VGGNARLVTELALPHTGLRLRATRELDEVLGLPDAGRSNLRGWGWGVTLALIAAAALLAFIGHRQHRLYRQLCRAGDENQ
RLIDRLRDERSRAYQLASHDHLTGLPNRLLFTELANSHLSRARRSHAPFVMMFLDLDRFKRINDTLGHRVGDLLLQEVAL
RLRQTVRETDIVARLGGDEFVLLLTELDALDDASRVARKLIEAIGQPMVLDGHEIEMRPSVGIAIHPRDGMDVEAMMRNA
DSAMYEAKRSGSGRFHYYDPSLNSRSSLQLDLNGRFRRAILGNEFVLHYQPRVTLNGFRVTSLEALIRWQHPERGLVPPG
EFIEYAEQEGLVVELGNWVVREACRQIAAWIAEGLEIVPVAINVSPKQLRDHSFVEVIRESVAHYGIRPALLEIEITERC
VVEDFERPRAALETLSALGLKIALDDYGTGFSSLSYLKQLPIDIIKIDRSFISDIRNARHDAAIVASTIALGHNLGLTVI
AEGVETREQVIYLRTAGCDEVQGYYFQKPAPPDAIRPLLAAGSQPMTAAG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=448, Percent_Identity=38.6160714285714, Blast_Score=316, Evalue=4e-87,
Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=31.9444444444444, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI226510982, Length=445, Percent_Identity=27.8651685393258, Blast_Score=188, Evalue=1e-48,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=32.3651452282158, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI1788502, Length=239, Percent_Identity=34.7280334728033, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=37.5527426160338, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=31.8181818181818, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=36.0655737704918, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=32.4894514767932, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=34.5833333333333, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI1788381, Length=428, Percent_Identity=27.1028037383178, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=31.3008130081301, Blast_Score=110, Evalue=4e-25,
Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=36.094674556213, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI87082096, Length=151, Percent_Identity=36.4238410596026, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788956, Length=186, Percent_Identity=34.4086021505376, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI1788085, Length=177, Percent_Identity=36.7231638418079, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=32.1212121212121, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=29.2397660818713, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=192, Percent_Identity=30.7291666666667, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1789650, Length=461, Percent_Identity=24.9457700650759, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=31.9277108433735, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081881, Length=194, Percent_Identity=33.5051546391753, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI87081974, Length=179, Percent_Identity=31.2849162011173, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=30.7262569832402, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=29.3333333333333, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=29.5180722891566, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 76065; Mature: 75934

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTCLPPASLSPSADGAAPPAAAQRRRKRIDSWAGLTMGPLLLVTLLVAAIWAGQSVHT
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
ERERALAIRTTFSHQESVLRMLAADETPANGMDDHATDESALINQLAAQVATNPALASTL
HHHHEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
TLLDPAGRVLWTPAFRPAPSPQAAQLRPGTPGSLSHSVVPLVGGNARLVTELALPHTGLR
HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCE
LRATRELDEVLGLPDAGRSNLRGWGWGVTLALIAAAALLAFIGHRQHRLYRQLCRAGDEN
EEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCH
QRLIDRLRDERSRAYQLASHDHLTGLPNRLLFTELANSHLSRARRSHAPFVMMFLDLDRF
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
KRINDTLGHRVGDLLLQEVALRLRQTVRETDIVARLGGDEFVLLLTELDALDDASRVARK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHCCHHHHHHHH
LIEAIGQPMVLDGHEIEMRPSVGIAIHPRDGMDVEAMMRNADSAMYEAKRSGSGRFHYYD
HHHHCCCCEEECCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
PSLNSRSSLQLDLNGRFRRAILGNEFVLHYQPRVTLNGFRVTSLEALIRWQHPERGLVPP
CCCCCCCEEEEECCCCCHHHHHCCCEEEEECCCEEECCEEHHHHHHHHHCCCCCCCCCCC
GEFIEYAEQEGLVVELGNWVVREACRQIAAWIAEGLEIVPVAINVSPKQLRDHSFVEVIR
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHH
ESVAHYGIRPALLEIEITERCVVEDFERPRAALETLSALGLKIALDDYGTGFSSLSYLKQ
HHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHH
LPIDIIKIDRSFISDIRNARHDAAIVASTIALGHNLGLTVIAEGVETREQVIYLRTAGCD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHCHHHEEEEEECCCC
EVQGYYFQKPAPPDAIRPLLAAGSQPMTAAG
CCCCEEECCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TDTCLPPASLSPSADGAAPPAAAQRRRKRIDSWAGLTMGPLLLVTLLVAAIWAGQSVHT
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
ERERALAIRTTFSHQESVLRMLAADETPANGMDDHATDESALINQLAAQVATNPALASTL
HHHHEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
TLLDPAGRVLWTPAFRPAPSPQAAQLRPGTPGSLSHSVVPLVGGNARLVTELALPHTGLR
HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCE
LRATRELDEVLGLPDAGRSNLRGWGWGVTLALIAAAALLAFIGHRQHRLYRQLCRAGDEN
EEEHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCH
QRLIDRLRDERSRAYQLASHDHLTGLPNRLLFTELANSHLSRARRSHAPFVMMFLDLDRF
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
KRINDTLGHRVGDLLLQEVALRLRQTVRETDIVARLGGDEFVLLLTELDALDDASRVARK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEHHHHCCHHHHHHHH
LIEAIGQPMVLDGHEIEMRPSVGIAIHPRDGMDVEAMMRNADSAMYEAKRSGSGRFHYYD
HHHHCCCCEEECCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC
PSLNSRSSLQLDLNGRFRRAILGNEFVLHYQPRVTLNGFRVTSLEALIRWQHPERGLVPP
CCCCCCCEEEEECCCCCHHHHHCCCEEEEECCCEEECCEEHHHHHHHHHCCCCCCCCCCC
GEFIEYAEQEGLVVELGNWVVREACRQIAAWIAEGLEIVPVAINVSPKQLRDHSFVEVIR
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHH
ESVAHYGIRPALLEIEITERCVVEDFERPRAALETLSALGLKIALDDYGTGFSSLSYLKQ
HHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHH
LPIDIIKIDRSFISDIRNARHDAAIVASTIALGHNLGLTVIAEGVETREQVIYLRTAGCD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHCHHHEEEEEECCCC
EVQGYYFQKPAPPDAIRPLLAAGSQPMTAAG
CCCCEEECCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]