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The map label for this gene is intB [H]

Identifier: 119898975

GI number: 119898975

Start: 2958597

End: 2959409

Strand: Reverse

Name: intB [H]

Synonym: azo2684

Alternate gene names: 119898975

Gene position: 2959409-2958597 (Counterclockwise)

Preceding gene: 119898978

Following gene: 119898972

Centisome position: 67.63

GC content: 60.15

Gene sequence:

>813_bases
GTGCCACTGACCGATACTCAGATCAAATCGCTAAAGCCGGACGCGAAGGCGAAGAAGTACGCCGATGAGAAGGGGTTGTT
TCTACTGGTCCAGCCCTCTGGTGGAAAGCTTTGGCGGGTGAAGTGCCGGTTCGTTGGCAAGGAGAAGTCGCTCGCCTTCG
GCGGTTACCCTGACGTCACGCTTAAGGCAGCGCGGGAGAGACGGGACGAGGCGCGTAAGCTGCTTGCAGCGGACGTGGAT
CCGAGCGAACACCAGAAGGGCGCAAGGGCCGCGGGCGTGGAGCGTACGGCCAACTCCTTCGAGGTGATCGCACGGGAGTG
GTACGGCAAGATGAAGGCCACTTGGGTGCCGTCGCACGGTGAGAAGATCATCCGCCGGCTTGAGCGAGACATTTTCCCCT
GGCTCGGTAGGAAGGCCATTGCCGAGATTACTGCTCCTGACCTCCTTGCCACCGTACGCAAGATAGAAGACCGGGGGCGC
TTGGAGACAGCGCATCGTGCGTTGCAGAACTGTGGGCAGATCTTCCGGTATGCGATTGCCACTGGGCGGGCGTCACGTGA
TCCGTCAGTAGATCTTCGGGGTGCGTTACCGCCCGTGAGAGAAAAGCACTTCGCAGCTATTGTGGATCCGGGCGAAGTAG
CGGGGCTTCTTCGTGCGATTGAGGGCTTCTCCGGTACCTATGTTGTCAAGGCTGCGCTCCAGTTGGCGCCACTAGTATTT
GCGCGGCCTGGCGAGCTGCGGCAAGCGCGGTGTGAGGATATCGATTCTCGAGACAGCCGAGTGGCGCTACTTTGTCACCA
AGACCAAGAGTGA

Upstream 100 bases:

>100_bases
GTGCTCGTCTGGGGGGCTGCCTTAGACGCGCAGCACCTCTCAATGGGCGGTTGTAGCGGGCCGCGATTGCTCTACAGTCC
CCCACTAGGGAGTTGTAGTC

Downstream 100 bases:

>100_bases
TCACCTGGTTCCGCTGTCCCTGCAAGCCGTCAAGATTCTGCGAGAACTTTACCCATTGACCGGCCGCAGTGCCTGGGTCT
TTCCGGACATGCGGGACCAT

Product: putative integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MPLTDTQIKSLKPDAKAKKYADEKGLFLLVQPSGGKLWRVKCRFVGKEKSLAFGGYPDVTLKAARERRDEARKLLAADVD
PSEHQKGARAAGVERTANSFEVIAREWYGKMKATWVPSHGEKIIRRLERDIFPWLGRKAIAEITAPDLLATVRKIEDRGR
LETAHRALQNCGQIFRYAIATGRASRDPSVDLRGALPPVREKHFAAIVDPGEVAGLLRAIEGFSGTYVVKAALQLAPLVF
ARPGELRQARCEDIDSRDSRVALLCHQDQE

Sequences:

>Translated_270_residues
MPLTDTQIKSLKPDAKAKKYADEKGLFLLVQPSGGKLWRVKCRFVGKEKSLAFGGYPDVTLKAARERRDEARKLLAADVD
PSEHQKGARAAGVERTANSFEVIAREWYGKMKATWVPSHGEKIIRRLERDIFPWLGRKAIAEITAPDLLATVRKIEDRGR
LETAHRALQNCGQIFRYAIATGRASRDPSVDLRGALPPVREKHFAAIVDPGEVAGLLRAIEGFSGTYVVKAALQLAPLVF
ARPGELRQARCEDIDSRDSRVALLCHQDQE
>Mature_269_residues
PLTDTQIKSLKPDAKAKKYADEKGLFLLVQPSGGKLWRVKCRFVGKEKSLAFGGYPDVTLKAARERRDEARKLLAADVDP
SEHQKGARAAGVERTANSFEVIAREWYGKMKATWVPSHGEKIIRRLERDIFPWLGRKAIAEITAPDLLATVRKIEDRGRL
ETAHRALQNCGQIFRYAIATGRASRDPSVDLRGALPPVREKHFAAIVDPGEVAGLLRAIEGFSGTYVVKAALQLAPLVFA
RPGELRQARCEDIDSRDSRVALLCHQDQE

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788690, Length=261, Percent_Identity=33.7164750957854, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1788974, Length=256, Percent_Identity=35.546875, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI145693166, Length=264, Percent_Identity=34.469696969697, Blast_Score=145, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 30048; Mature: 29917

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTDTQIKSLKPDAKAKKYADEKGLFLLVQPSGGKLWRVKCRFVGKEKSLAFGGYPDVT
CCCCCCHHHHCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCCEEECCCCCHH
LKAARERRDEARKLLAADVDPSEHQKGARAAGVERTANSFEVIAREWYGKMKATWVPSHG
HHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHCHHHHHHHHHHHHHHHHCCCEEEECCCHH
EKIIRRLERDIFPWLGRKAIAEITAPDLLATVRKIEDRGRLETAHRALQNCGQIFRYAIA
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
TGRASRDPSVDLRGALPPVREKHFAAIVDPGEVAGLLRAIEGFSGTYVVKAALQLAPLVF
HCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ARPGELRQARCEDIDSRDSRVALLCHQDQE
CCCCHHHHHHHHCCCCCCCEEEEEEECCCC
>Mature Secondary Structure 
PLTDTQIKSLKPDAKAKKYADEKGLFLLVQPSGGKLWRVKCRFVGKEKSLAFGGYPDVT
CCCCCHHHHCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCCEEECCCCCHH
LKAARERRDEARKLLAADVDPSEHQKGARAAGVERTANSFEVIAREWYGKMKATWVPSHG
HHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHCHHHHHHHHHHHHHHHHCCCEEEECCCHH
EKIIRRLERDIFPWLGRKAIAEITAPDLLATVRKIEDRGRLETAHRALQNCGQIFRYAIA
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
TGRASRDPSVDLRGALPPVREKHFAAIVDPGEVAGLLRAIEGFSGTYVVKAALQLAPLVF
HCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ARPGELRQARCEDIDSRDSRVALLCHQDQE
CCCCHHHHHHHHCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]