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The map label for this gene is ymdB [C]

Identifier: 119898928

GI number: 119898928

Start: 2915888

End: 2916406

Strand: Reverse

Name: ymdB [C]

Synonym: azo2637

Alternate gene names: 119898928

Gene position: 2916406-2915888 (Counterclockwise)

Preceding gene: 119898929

Following gene: 119898927

Centisome position: 66.64

GC content: 60.89

Gene sequence:

>519_bases
ATGTCTGCAATTTTTACTGCACTTAACGCCGATATCACGACCCTTCGGGTCGACGCCATCGTGAATGCCGCCAATTCGTC
GTTGCTGGGCGGCGGCGGAGTCGATGGTGCTATCCACCGTGCGGCAGGGCCAGAACTCCGGGAGGCTTGTCGGTGGCTTG
GCGGGTGCCGGACAGGAGCAGCAAAACTCACCCCGGCCTACCAGTTGGCGGCAAAGTTTGTCATCCATACTGTAGGTCCG
GTTTGGCATGGGGGAGCCCAGGGCGAGCCAGAACTCCTGGCCTCGTGTTATCGAAGCGCGTTGGAACTCGCGGCTGAGCA
CGGCGTTGCGTCCATCGCCTTCCCCGCCATCAGTACAGGCGCCTACGGGTATCCGATTGAGTTGGCTGCCCGGGTCGCGG
TCGAAGTCGTGCGCGTTGAGGTGCTTCGGAAGGGGGCCGTTGGGGAAGTCATCTTTTGCTGCCACTCGGGAGATCACTTG
GCTGTCTATCAACAGTTACTGAGGGAGATGCCGGTCTGA

Upstream 100 bases:

>100_bases
GCCAACTGATTGTGGAGTGCCGGTACAAAGACGGGCGGTAGGCGCGTATTGGCTTTTTTGGGGAACAACGCTTTCGCAGA
GGGTGAAGGAGTGACACAGG

Downstream 100 bases:

>100_bases
CAAGGCAGTCCTTTTACCTGTTTGCGTTGCCGTAATATGGCGCTGCTGTTACCCATTGACCGCGGAGATGATCTTGTTGT
CAGCAATGAACGGGAGTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSAIFTALNADITTLRVDAIVNAANSSLLGGGGVDGAIHRAAGPELREACRWLGGCRTGAAKLTPAYQLAAKFVIHTVGP
VWHGGAQGEPELLASCYRSALELAAEHGVASIAFPAISTGAYGYPIELAARVAVEVVRVEVLRKGAVGEVIFCCHSGDHL
AVYQQLLREMPV

Sequences:

>Translated_172_residues
MSAIFTALNADITTLRVDAIVNAANSSLLGGGGVDGAIHRAAGPELREACRWLGGCRTGAAKLTPAYQLAAKFVIHTVGP
VWHGGAQGEPELLASCYRSALELAAEHGVASIAFPAISTGAYGYPIELAARVAVEVVRVEVLRKGAVGEVIFCCHSGDHL
AVYQQLLREMPV
>Mature_171_residues
SAIFTALNADITTLRVDAIVNAANSSLLGGGGVDGAIHRAAGPELREACRWLGGCRTGAAKLTPAYQLAAKFVIHTVGPV
WHGGAQGEPELLASCYRSALELAAEHGVASIAFPAISTGAYGYPIELAARVAVEVVRVEVLRKGAVGEVIFCCHSGDHLA
VYQQLLREMPV

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=163, Percent_Identity=53.3742331288344, Blast_Score=161, Evalue=3e-40,
Organism=Homo sapiens, GI13569840, Length=173, Percent_Identity=50.2890173410405, Blast_Score=157, Evalue=6e-39,
Organism=Homo sapiens, GI207450721, Length=158, Percent_Identity=40.5063291139241, Blast_Score=115, Evalue=1e-26,
Organism=Homo sapiens, GI8923143, Length=158, Percent_Identity=40.5063291139241, Blast_Score=115, Evalue=1e-26,
Organism=Homo sapiens, GI154813199, Length=134, Percent_Identity=36.5671641791045, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI20336746, Length=169, Percent_Identity=29.585798816568, Blast_Score=78, Evalue=3e-15,
Organism=Homo sapiens, GI226371718, Length=141, Percent_Identity=35.4609929078014, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI226371716, Length=141, Percent_Identity=35.4609929078014, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI226371714, Length=141, Percent_Identity=35.4609929078014, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI226371712, Length=141, Percent_Identity=35.4609929078014, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI226371710, Length=141, Percent_Identity=35.4609929078014, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI226371706, Length=141, Percent_Identity=35.4609929078014, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI93141018, Length=167, Percent_Identity=26.9461077844311, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI93141020, Length=167, Percent_Identity=26.9461077844311, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI4758496, Length=167, Percent_Identity=26.9461077844311, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1787283, Length=174, Percent_Identity=49.4252873563218, Blast_Score=159, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17538214, Length=146, Percent_Identity=50.6849315068493, Blast_Score=128, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24586353, Length=156, Percent_Identity=34.6153846153846, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 17935; Mature: 17804

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIFTALNADITTLRVDAIVNAANSSLLGGGGVDGAIHRAAGPELREACRWLGGCRTGA
CCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCC
AKLTPAYQLAAKFVIHTVGPVWHGGAQGEPELLASCYRSALELAAEHGVASIAFPAISTG
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHEECCHHCCC
AYGYPIELAARVAVEVVRVEVLRKGAVGEVIFCCHSGDHLAVYQQLLREMPV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAIFTALNADITTLRVDAIVNAANSSLLGGGGVDGAIHRAAGPELREACRWLGGCRTGA
CHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCC
AKLTPAYQLAAKFVIHTVGPVWHGGAQGEPELLASCYRSALELAAEHGVASIAFPAISTG
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHEECCHHCCC
AYGYPIELAARVAVEVVRVEVLRKGAVGEVIFCCHSGDHLAVYQQLLREMPV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]