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The map label for this gene is cspA [H]

Identifier: 119898894

GI number: 119898894

Start: 2886879

End: 2887082

Strand: Reverse

Name: cspA [H]

Synonym: azo2603

Alternate gene names: 119898894

Gene position: 2887082-2886879 (Counterclockwise)

Preceding gene: 119898896

Following gene: 119898893

Centisome position: 65.97

GC content: 60.29

Gene sequence:

>204_bases
ATGGCAACAGGTACCGTGAAGTGGTTCAACGACGCGAAGGGCTTTGGTTTCATCACGCCGGAAAACGGTGGTGAGGATCT
CTTCGCCCACTTCTCCGCGATCCAGGGTTCCGGCTTCAAGTCGCTGGCCGAAGGCCAGCGCGTCGAGTTCGAAATCACGC
GTGGCCCGAAGGGCCAGCAGGCGTCCAACATTCGCCCGCTGTAA

Upstream 100 bases:

>100_bases
TCCGCGTTTTCGCGCGGCGTTCTCCCTTCACTGCCAGCCGTCTTGATCTTCGCCTTACCGGGGATATCCCCTCACTTTAT
TTTTTTTGGATGTACAAGAC

Downstream 100 bases:

>100_bases
CTGCTGAATGTGGCGCGGCGTTCTGCCCGCGCCCTCCGCAGCAGGGGGTGTTCCCGTCTGCGGTTCGCCCCCCACTCCGA
AAAGAAACCCGGCTTCGGTC

Product: cold shock-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MATGTVKWFNDAKGFGFITPENGGEDLFAHFSAIQGSGFKSLAEGQRVEFEITRGPKGQQASNIRPL

Sequences:

>Translated_67_residues
MATGTVKWFNDAKGFGFITPENGGEDLFAHFSAIQGSGFKSLAEGQRVEFEITRGPKGQQASNIRPL
>Mature_66_residues
ATGTVKWFNDAKGFGFITPENGGEDLFAHFSAIQGSGFKSLAEGQRVEFEITRGPKGQQASNIRPL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=70.3125, Blast_Score=98, Evalue=1e-22,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=61.1940298507463, Blast_Score=94, Evalue=2e-21,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=65.625, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=61.5384615384615, Blast_Score=86, Evalue=3e-19,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=60, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=55.3846153846154, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=56.4516129032258, Blast_Score=79, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=52.4590163934426, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7246; Mature: 7115

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTVKWFNDAKGFGFITPENGGEDLFAHFSAIQGSGFKSLAEGQRVEFEITRGPKGQQ
CCCCCEEECCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC
ASNIRPL
CCCCCCC
>Mature Secondary Structure 
ATGTVKWFNDAKGFGFITPENGGEDLFAHFSAIQGSGFKSLAEGQRVEFEITRGPKGQQ
CCCCEEECCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC
ASNIRPL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA