Click here to switch to the map view.

The map label for this gene is dapB [H]

Identifier: 119898867

GI number: 119898867

Start: 2856467

End: 2857276

Strand: Reverse

Name: dapB [H]

Synonym: azo2576

Alternate gene names: 119898867

Gene position: 2857276-2856467 (Counterclockwise)

Preceding gene: 119898868

Following gene: 119898866

Centisome position: 65.29

GC content: 69.14

Gene sequence:

>810_bases
ATGACGACACCTGTACGTGTAGCAATCGCAGGCGCTTCCGGCCGCATGGGCCGCATGCTCATCGAGGCCGCGCTGAAGGA
CGAGGAGGTCGTGCTGGCCGCCGCGTTCGACCGCGCCGGCTCGCCCTTCATCGGTCGCGATGCCGGCGAATTCGCCGGCG
TGGCGAGCGGCGTCGCGATCACCGACGACGTGCACGCCGCGGTGGCCGCCGCCGACTGCGTGATCGACTTCACCCGCCCC
GAAGGCACGCTGGCGCACCTTGCCATCGCGCGCGAGCTGGGCAAGGCGATGGTGATCGGCACCACCGGTTTCGAGGCCGC
CGGCAAGGCCGCGATCGCCGACGCCGCACAGGCCATTCCGGTGGTGTTCGCCCCCAACATGGCGGTCGGCGTCAATGCGG
TGTTCCGCCTGCTGGAGGTTGCCGCGCGCATCCTCGACGAAGGCTACGACGTCGAGGTGATCGAAGCGCACCACCGCTTC
AAGGTCGATGCACCGTCCGGTACCGCGCTGCGCATGGGTGAAGTGGTGGCGCGCGAACTCGGGCGCGACCTCGAAACCTG
CGCCATCTATGGCCGCGAAGGCGTCACCGGCGAACGCAAGGCGGAGACGATCGGGTTCTCCACCATCCGCGGCGGCGACG
TTGTCGGCGACCACACGGTGCTGTTCGCCGGCATCGGTGAGCGCATCGAGATCACCCACAAGTCGGGTAGCCGCATGCCG
TATGCGCTGGGCTCGATGCGGGCCGCGCGTTTCCTGCGCGGGCGCAGCAACGGCCTGTTCGACATGCAGGACGTACTCGG
CCTGCGCTAG

Upstream 100 bases:

>100_bases
GCTGCCAGCCAGCAGGCCAACCGCAGCCGCGTGGTTGAAGTGCCCGCGGAAAGCAAGAAGTGACGTGGGCGGCCCAGGCC
GCTCCAATCAGGAACAAGAC

Downstream 100 bases:

>100_bases
GTCGCCACGATGAGCGCCGGGCCCGCGACACCCGAAGGGGATGACCAGCGGACGGCGCCCGCCGCCGACGCCGCGTCGCT
GCGGCGCGAACTCCAGATCA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MTTPVRVAIAGASGRMGRMLIEAALKDEEVVLAAAFDRAGSPFIGRDAGEFAGVASGVAITDDVHAAVAAADCVIDFTRP
EGTLAHLAIARELGKAMVIGTTGFEAAGKAAIADAAQAIPVVFAPNMAVGVNAVFRLLEVAARILDEGYDVEVIEAHHRF
KVDAPSGTALRMGEVVARELGRDLETCAIYGREGVTGERKAETIGFSTIRGGDVVGDHTVLFAGIGERIEITHKSGSRMP
YALGSMRAARFLRGRSNGLFDMQDVLGLR

Sequences:

>Translated_269_residues
MTTPVRVAIAGASGRMGRMLIEAALKDEEVVLAAAFDRAGSPFIGRDAGEFAGVASGVAITDDVHAAVAAADCVIDFTRP
EGTLAHLAIARELGKAMVIGTTGFEAAGKAAIADAAQAIPVVFAPNMAVGVNAVFRLLEVAARILDEGYDVEVIEAHHRF
KVDAPSGTALRMGEVVARELGRDLETCAIYGREGVTGERKAETIGFSTIRGGDVVGDHTVLFAGIGERIEITHKSGSRMP
YALGSMRAARFLRGRSNGLFDMQDVLGLR
>Mature_268_residues
TTPVRVAIAGASGRMGRMLIEAALKDEEVVLAAAFDRAGSPFIGRDAGEFAGVASGVAITDDVHAAVAAADCVIDFTRPE
GTLAHLAIARELGKAMVIGTTGFEAAGKAAIADAAQAIPVVFAPNMAVGVNAVFRLLEVAARILDEGYDVEVIEAHHRFK
VDAPSGTALRMGEVVARELGRDLETCAIYGREGVTGERKAETIGFSTIRGGDVVGDHTVLFAGIGERIEITHKSGSRMPY
ALGSMRAARFLRGRSNGLFDMQDVLGLR

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=266, Percent_Identity=59.3984962406015, Blast_Score=296, Evalue=1e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 28180; Mature: 28048

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPVRVAIAGASGRMGRMLIEAALKDEEVVLAAAFDRAGSPFIGRDAGEFAGVASGVAI
CCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCEE
TDDVHAAVAAADCVIDFTRPEGTLAHLAIARELGKAMVIGTTGFEAAGKAAIADAAQAIP
ECHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCE
VVFAPNMAVGVNAVFRLLEVAARILDEGYDVEVIEAHHRFKVDAPSGTALRMGEVVAREL
EEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHH
GRDLETCAIYGREGVTGERKAETIGFSTIRGGDVVGDHTVLFAGIGERIEITHKSGSRMP
CCCHHHHEEECCCCCCCCCHHHHCCCEEECCCCEECCCEEEEEECCCEEEEEECCCCCCC
YALGSMRAARFLRGRSNGLFDMQDVLGLR
HHHHHHHHHHHHHCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
TTPVRVAIAGASGRMGRMLIEAALKDEEVVLAAAFDRAGSPFIGRDAGEFAGVASGVAI
CCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCEE
TDDVHAAVAAADCVIDFTRPEGTLAHLAIARELGKAMVIGTTGFEAAGKAAIADAAQAIP
ECHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCE
VVFAPNMAVGVNAVFRLLEVAARILDEGYDVEVIEAHHRFKVDAPSGTALRMGEVVAREL
EEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHH
GRDLETCAIYGREGVTGERKAETIGFSTIRGGDVVGDHTVLFAGIGERIEITHKSGSRMP
CCCHHHHEEECCCCCCCCCHHHHCCCEEECCCCEECCCEEEEEECCCEEEEEECCCCCCC
YALGSMRAARFLRGRSNGLFDMQDVLGLR
HHHHHHHHHHHHHCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA