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The map label for this gene is yhjC [H]

Identifier: 119898858

GI number: 119898858

Start: 2843306

End: 2844313

Strand: Reverse

Name: yhjC [H]

Synonym: azo2567

Alternate gene names: 119898858

Gene position: 2844313-2843306 (Counterclockwise)

Preceding gene: 119898862

Following gene: 119898857

Centisome position: 65.0

GC content: 67.96

Gene sequence:

>1008_bases
ATGGATCGTTTTCAGGCCATGCAGGTGTTCACGCGCGTGGTGGACGCCAACAGCTTTTCGCGCGCGGCCGACAGCCTCGG
CCTGCCACGCGCGACCGTGACCAACATCATCCAGAACCTGGAACGCCTGCTGCAGGTGCGGCTGCTCAACCGCAGCACGC
GGCGCCTGAGCCTGACGCAGGATGGCGCCGCCTACTACGAGCGCTGCGTCGCCATCCTGGCCGACGTGGAGGAGACCGAG
TCGTCGTTTCGCGACGCCGCGAGCGGCCCGCGCGGCCGCCTGCGGATCGACGTACCGGCCTCGCTCGGCCGCCTGGTGCT
GATTCCGCGCCTGTGCGACTTCCACACCCGCTATCCCGAGCTGGAAATCGCGATCGGCATGACCGACCGTCCGGTGGACA
TGGTGCGCGAGGCGGTCGATTGCGCGCTGCGGGTCGGCCACCTGCCGGATTCGTCGTTGGTGGCGCGGCGTATCGGCACC
TTCTTCCTGGTCACCTGCGCGGCGCCGTCCTACCTGGAACGCCACGGCGAGCCGAGGACGATCGCCGAGCTGGCAAATCA
CAGCGCGGTCAATTACTTCTCCAGCCTCAACGGCCGCACGCTGGACTGGGATTTCGTCGTCGATGGCCACGTCACCGAGG
TCAAGATGAAGGGCGTGGTTTCGGTTAACGACGGCGATGCCTATCTCGCCTGCGCGCTGCAGGGCTTCGGCATGGTGCAG
ATGCCGCGCTTCATGGCGCTGCCCCACCTGGAATCCGGCGCGCTGCGCGAGGTGCTGCCGCAGTGGAGCCCGGCGCCGAT
GCCGATCTCCGCGGTGTATCCGGCCAACCGCCACCTGTCGCCCAAGGTGCGCGCCTTCGTCGATTGGGTGGCCGAGCTTT
TCGCCGCCTGTCCGCTGCTGGGCGGCACGGCCGCGGTCGATTACTGCTGCAGTTACGAGGGCAAGCCGGCGGGCAACACC
CTGCGATCGGTGGTGGAGCAGCACAACCTGGCCGAAAGCGCGCTGTAG

Upstream 100 bases:

>100_bases
AACCGGAAACACTATTCGGTAAAGGCAAATAATACTGGCCAATTCCCATGGATAATTCGCTTACCGGAAAATCGCCGCGG
CAGACGTTTGGGGAGTCGGA

Downstream 100 bases:

>100_bases
GTCGGCGACGCCCGCGCACATGCGGATGTCCTTGCGGGCGGGGATGGGCGGATAATCACGTCCATCTCGAAGCCGCCGCC
GGAGGATGGCCATGTGGGAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MDRFQAMQVFTRVVDANSFSRAADSLGLPRATVTNIIQNLERLLQVRLLNRSTRRLSLTQDGAAYYERCVAILADVEETE
SSFRDAASGPRGRLRIDVPASLGRLVLIPRLCDFHTRYPELEIAIGMTDRPVDMVREAVDCALRVGHLPDSSLVARRIGT
FFLVTCAAPSYLERHGEPRTIAELANHSAVNYFSSLNGRTLDWDFVVDGHVTEVKMKGVVSVNDGDAYLACALQGFGMVQ
MPRFMALPHLESGALREVLPQWSPAPMPISAVYPANRHLSPKVRAFVDWVAELFAACPLLGGTAAVDYCCSYEGKPAGNT
LRSVVEQHNLAESAL

Sequences:

>Translated_335_residues
MDRFQAMQVFTRVVDANSFSRAADSLGLPRATVTNIIQNLERLLQVRLLNRSTRRLSLTQDGAAYYERCVAILADVEETE
SSFRDAASGPRGRLRIDVPASLGRLVLIPRLCDFHTRYPELEIAIGMTDRPVDMVREAVDCALRVGHLPDSSLVARRIGT
FFLVTCAAPSYLERHGEPRTIAELANHSAVNYFSSLNGRTLDWDFVVDGHVTEVKMKGVVSVNDGDAYLACALQGFGMVQ
MPRFMALPHLESGALREVLPQWSPAPMPISAVYPANRHLSPKVRAFVDWVAELFAACPLLGGTAAVDYCCSYEGKPAGNT
LRSVVEQHNLAESAL
>Mature_335_residues
MDRFQAMQVFTRVVDANSFSRAADSLGLPRATVTNIIQNLERLLQVRLLNRSTRRLSLTQDGAAYYERCVAILADVEETE
SSFRDAASGPRGRLRIDVPASLGRLVLIPRLCDFHTRYPELEIAIGMTDRPVDMVREAVDCALRVGHLPDSSLVARRIGT
FFLVTCAAPSYLERHGEPRTIAELANHSAVNYFSSLNGRTLDWDFVVDGHVTEVKMKGVVSVNDGDAYLACALQGFGMVQ
MPRFMALPHLESGALREVLPQWSPAPMPISAVYPANRHLSPKVRAFVDWVAELFAACPLLGGTAAVDYCCSYEGKPAGNT
LRSVVEQHNLAESAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=38.4879725085911, Blast_Score=231, Evalue=3e-62,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=34.7682119205298, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=30.1694915254237, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=32.1678321678322, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=30.0353356890459, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=31.2925170068027, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=26.1484098939929, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1789173, Length=258, Percent_Identity=26.3565891472868, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=23.0508474576271, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788706, Length=294, Percent_Identity=21.4285714285714, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790011, Length=294, Percent_Identity=22.7891156462585, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87082132, Length=296, Percent_Identity=25.3378378378378, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36877; Mature: 36877

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFQAMQVFTRVVDANSFSRAADSLGLPRATVTNIIQNLERLLQVRLLNRSTRRLSLTQ
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
DGAAYYERCVAILADVEETESSFRDAASGPRGRLRIDVPASLGRLVLIPRLCDFHTRYPE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEHHHHHHHHCCCCC
LEIAIGMTDRPVDMVREAVDCALRVGHLPDSSLVARRIGTFFLVTCAAPSYLERHGEPRT
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCHHHHHHCCCCHH
IAELANHSAVNYFSSLNGRTLDWDFVVDGHVTEVKMKGVVSVNDGDAYLACALQGFGMVQ
HHHHHCCHHHHHHHHCCCCEEEEEEEECCCEEEEEEEEEEEECCCCEEEEEHHHCCCCHH
MPRFMALPHLESGALREVLPQWSPAPMPISAVYPANRHLSPKVRAFVDWVAELFAACPLL
CCHHHHCCCCCCCHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC
GGTAAVDYCCSYEGKPAGNTLRSVVEQHNLAESAL
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDRFQAMQVFTRVVDANSFSRAADSLGLPRATVTNIIQNLERLLQVRLLNRSTRRLSLTQ
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
DGAAYYERCVAILADVEETESSFRDAASGPRGRLRIDVPASLGRLVLIPRLCDFHTRYPE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEHHHHHHHHCCCCC
LEIAIGMTDRPVDMVREAVDCALRVGHLPDSSLVARRIGTFFLVTCAAPSYLERHGEPRT
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCHHHHHHCCCCHH
IAELANHSAVNYFSSLNGRTLDWDFVVDGHVTEVKMKGVVSVNDGDAYLACALQGFGMVQ
HHHHHCCHHHHHHHHCCCCEEEEEEEECCCEEEEEEEEEEEECCCCEEEEEHHHCCCCHH
MPRFMALPHLESGALREVLPQWSPAPMPISAVYPANRHLSPKVRAFVDWVAELFAACPLL
CCHHHHCCCCCCCHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC
GGTAAVDYCCSYEGKPAGNTLRSVVEQHNLAESAL
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]