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The map label for this gene is rpoE [H]

Identifier: 119898855

GI number: 119898855

Start: 2840924

End: 2841424

Strand: Direct

Name: rpoE [H]

Synonym: azo2564

Alternate gene names: 119898855

Gene position: 2840924-2841424 (Clockwise)

Preceding gene: 119898854

Following gene: 119898856

Centisome position: 64.92

GC content: 74.65

Gene sequence:

>501_bases
ATGGACGGCGCCGCGCTGCTGGCCGAACTGCCCCGCCTGCGCCGCTACGCGCGGGCGCTGGTGGGCGAGCGCGCGGCCGC
CGACGACCTGGTGCAGGACACCCTGGAGCGCGCATGGACGCGCGCCGCCCAGTGGCGCCCGGAGAACCCGCTGCGCCCCT
GGCTGTTCGGCATCATGCACAACCTGCGCATCGACCAGCTGCGCCGCCCCGGCCTCCACACCCGGCCGCTGGAGGACGAG
GATTTCGAGCTGCCGGTGCGCGCGACGCAGAGCGACGCGCTCGAGGTGGGCGATCTCGACGCCGCGCTCGCCCGGCTGCC
CGAGGAGCAGCGCGCGGTGCTGTTGCTGGTGGCGCTGGAAGGCATGCGCTACGAAGACATCGCCGCGACACTGGGCGTGC
CGCTGGGCACGGTGATGTCGCGGCTGTCGCGCGGGCGCGAACGACTGCGCGCAATCATGGGCGAGGCGCCGGCGGCCAAC
CGCCTGCGGGTGGTGCGATGA

Upstream 100 bases:

>100_bases
GGCAAGCCGCTGTACTTCTGGGCCAAGGACGGCAAGCCGGGCGACAAGACCGGCGACAACTTCAACAACGTCTGGCACGC
CGCCAAGCCCTGAGCCCGGC

Downstream 100 bases:

>100_bases
GCAAACGCAAGATCAACGAAGGCGATCTCCACGCCTGGGCGGACGACCTGCTCGCGGACGAGCGCCGCGCCGAGGTGGAG
GACTGGCTCGCCGCGCATCC

Product: putative RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MDGAALLAELPRLRRYARALVGERAAADDLVQDTLERAWTRAAQWRPENPLRPWLFGIMHNLRIDQLRRPGLHTRPLEDE
DFELPVRATQSDALEVGDLDAALARLPEEQRAVLLLVALEGMRYEDIAATLGVPLGTVMSRLSRGRERLRAIMGEAPAAN
RLRVVR

Sequences:

>Translated_166_residues
MDGAALLAELPRLRRYARALVGERAAADDLVQDTLERAWTRAAQWRPENPLRPWLFGIMHNLRIDQLRRPGLHTRPLEDE
DFELPVRATQSDALEVGDLDAALARLPEEQRAVLLLVALEGMRYEDIAATLGVPLGTVMSRLSRGRERLRAIMGEAPAAN
RLRVVR
>Mature_166_residues
MDGAALLAELPRLRRYARALVGERAAADDLVQDTLERAWTRAAQWRPENPLRPWLFGIMHNLRIDQLRRPGLHTRPLEDE
DFELPVRATQSDALEVGDLDAALARLPEEQRAVLLLVALEGMRYEDIAATLGVPLGTVMSRLSRGRERLRAIMGEAPAAN
RLRVVR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18704; Mature: 18704

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGAALLAELPRLRRYARALVGERAAADDLVQDTLERAWTRAAQWRPENPLRPWLFGIMH
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
NLRIDQLRRPGLHTRPLEDEDFELPVRATQSDALEVGDLDAALARLPEEQRAVLLLVALE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHCCHHHHHEEHHHHHC
GMRYEDIAATLGVPLGTVMSRLSRGRERLRAIMGEAPAANRLRVVR
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC
>Mature Secondary Structure
MDGAALLAELPRLRRYARALVGERAAADDLVQDTLERAWTRAAQWRPENPLRPWLFGIMH
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
NLRIDQLRRPGLHTRPLEDEDFELPVRATQSDALEVGDLDAALARLPEEQRAVLLLVALE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHCCHHHHHEEHHHHHC
GMRYEDIAATLGVPLGTVMSRLSRGRERLRAIMGEAPAANRLRVVR
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]