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The map label for this gene is ligC [H]

Identifier: 119898827

GI number: 119898827

Start: 2804153

End: 2805112

Strand: Reverse

Name: ligC [H]

Synonym: azo2536

Alternate gene names: 119898827

Gene position: 2805112-2804153 (Counterclockwise)

Preceding gene: 119898828

Following gene: 119898826

Centisome position: 64.1

GC content: 63.85

Gene sequence:

>960_bases
ATGAGCAAGACGATCAAGGTTGCGCTGGCCGGCGCCGGCGCTTTCGGCATCAAGCACCTGGACGGCATCAAGAACATCGA
CGGCGTGGAAGTGGTGTCGCTGATCAGCCGCGACCTGGAAAAGACGAAGGAAGTGGCCGACAAGTACGGCATCGGCCACG
TCACCACCGACCTCGCCGACAGCCTCGCGCTGCCGGAAGTCGACGCGGTGATCCTGTGCACGCCGACCCAGATGCACGCT
GCCCAGGCCATCCAGTGCATGAAGGCCGGCAAGCACGTGCAGGTCGAAATCCCGCTGTGCGACAAGCTCTCCGACGGCGA
GGAAGTCGCCCGCCTGCAGAAGGAAACCGGGCTGGTGGCGATGGTCGGCCACACCCGCCGCTTCAACCCCAGCCACCAGT
GGGTGCACAAGAAGATCGAAGCCGGCGAGTTCAACGTCCAGCAGATGGACGTGCAGACCTACTTCTTCCGCCGCACCAAC
ATGAACGCGCTGGGCCAGCCGCGCAGCTGGACCGACCACCTGCTGTGGCACCACGCCGCCCACACCGTGGACCTGTTCGC
CTACCAGGCCGGCAGCCCGATCGTGAAGGCCAACGCCATCCAGGGCCCCATCCATCCGACCCTGGGCATCGCGATGGACA
TGAGCATCCAGCTGAAGGCCGCCAACGGCGCGATCTGCACGCTGAGCCTGTCCTTCAACAACGACGGCCCGCTCGGCACC
TTCTTCCGCTACATCGGCGACACCGGCACCTACATCGCGCGCTACGACGATCTGGTGAACGGTAAGGAAGAGAAGATCGA
CGTCAGCAAGGTCGACGTCTCAATGAACGGCATCGAACTGCAGGACCGCGAATTCTTCGCCGCCATCCGCGAAGGCCGCG
AGCCGAACTCCAGCGTGGCTTCGGTGTTCGCCTGCTACAAGGTGCTGCACGATCTGGAACAGCAGCTCAACGCTGGTTGA

Upstream 100 bases:

>100_bases
CTAGCCGTTCCGGCCTGGCCGGAATCGACGAGGTCGCTCCGGCGCAGGCGATGCCCCGCAACAGGGGCTGCTTCGCACAC
ATGACAAACGGGGGTATTCA

Downstream 100 bases:

>100_bases
GCCGCTGCGGACGACGCCGCCCTCCCTCCTCTCGGGGCGGCGTCTTTTTTTTTCGGAGTTGGAAGGTCCGCGGGTTGGTT
GCCTTGCTCCCTCCCTTTGA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSKTIKVALAGAGAFGIKHLDGIKNIDGVEVVSLISRDLEKTKEVADKYGIGHVTTDLADSLALPEVDAVILCTPTQMHA
AQAIQCMKAGKHVQVEIPLCDKLSDGEEVARLQKETGLVAMVGHTRRFNPSHQWVHKKIEAGEFNVQQMDVQTYFFRRTN
MNALGQPRSWTDHLLWHHAAHTVDLFAYQAGSPIVKANAIQGPIHPTLGIAMDMSIQLKAANGAICTLSLSFNNDGPLGT
FFRYIGDTGTYIARYDDLVNGKEEKIDVSKVDVSMNGIELQDREFFAAIREGREPNSSVASVFACYKVLHDLEQQLNAG

Sequences:

>Translated_319_residues
MSKTIKVALAGAGAFGIKHLDGIKNIDGVEVVSLISRDLEKTKEVADKYGIGHVTTDLADSLALPEVDAVILCTPTQMHA
AQAIQCMKAGKHVQVEIPLCDKLSDGEEVARLQKETGLVAMVGHTRRFNPSHQWVHKKIEAGEFNVQQMDVQTYFFRRTN
MNALGQPRSWTDHLLWHHAAHTVDLFAYQAGSPIVKANAIQGPIHPTLGIAMDMSIQLKAANGAICTLSLSFNNDGPLGT
FFRYIGDTGTYIARYDDLVNGKEEKIDVSKVDVSMNGIELQDREFFAAIREGREPNSSVASVFACYKVLHDLEQQLNAG
>Mature_318_residues
SKTIKVALAGAGAFGIKHLDGIKNIDGVEVVSLISRDLEKTKEVADKYGIGHVTTDLADSLALPEVDAVILCTPTQMHAA
QAIQCMKAGKHVQVEIPLCDKLSDGEEVARLQKETGLVAMVGHTRRFNPSHQWVHKKIEAGEFNVQQMDVQTYFFRRTNM
NALGQPRSWTDHLLWHHAAHTVDLFAYQAGSPIVKANAIQGPIHPTLGIAMDMSIQLKAANGAICTLSLSFNNDGPLGTF
FRYIGDTGTYIARYDDLVNGKEEKIDVSKVDVSMNGIELQDREFFAAIREGREPNSSVASVFACYKVLHDLEQQLNAG

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI1789848, Length=192, Percent_Identity=29.6875, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35000; Mature: 34869

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTIKVALAGAGAFGIKHLDGIKNIDGVEVVSLISRDLEKTKEVADKYGIGHVTTDLAD
CCCEEEEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
SLALPEVDAVILCTPTQMHAAQAIQCMKAGKHVQVEIPLCDKLSDGEEVARLQKETGLVA
HCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCEEE
MVGHTRRFNPSHQWVHKKIEAGEFNVQQMDVQTYFFRRTNMNALGQPRSWTDHLLWHHAA
EECCCCCCCCCHHHHHHHHCCCCCCCEEEEHHEEEEEECCCCCCCCCCCHHHHHHHHHHH
HTVDLFAYQAGSPIVKANAIQGPIHPTLGIAMDMSIQLKAANGAICTLSLSFNNDGPLGT
HHEEEEEEECCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCHHH
FFRYIGDTGTYIARYDDLVNGKEEKIDVSKVDVSMNGIELQDREFFAAIREGREPNSSVA
HHHHHCCCCCEEEEHHHHHCCCHHEEEEEEEEEEECCCEECHHHHHHHHHCCCCCCHHHH
SVFACYKVLHDLEQQLNAG
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKTIKVALAGAGAFGIKHLDGIKNIDGVEVVSLISRDLEKTKEVADKYGIGHVTTDLAD
CCEEEEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
SLALPEVDAVILCTPTQMHAAQAIQCMKAGKHVQVEIPLCDKLSDGEEVARLQKETGLVA
HCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCEEE
MVGHTRRFNPSHQWVHKKIEAGEFNVQQMDVQTYFFRRTNMNALGQPRSWTDHLLWHHAA
EECCCCCCCCCHHHHHHHHCCCCCCCEEEEHHEEEEEECCCCCCCCCCCHHHHHHHHHHH
HTVDLFAYQAGSPIVKANAIQGPIHPTLGIAMDMSIQLKAANGAICTLSLSFNNDGPLGT
HHEEEEEEECCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCHHH
FFRYIGDTGTYIARYDDLVNGKEEKIDVSKVDVSMNGIELQDREFFAAIREGREPNSSVA
HHHHHCCCCCEEEEHHHHHCCCHHEEEEEEEEEEECCCEECHHHHHHHHHCCCCCCHHHH
SVFACYKVLHDLEQQLNAG
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]