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The map label for this gene is pobR2 [C]

Identifier: 119898817

GI number: 119898817

Start: 2793435

End: 2794322

Strand: Reverse

Name: pobR2 [C]

Synonym: azo2526

Alternate gene names: 119898817

Gene position: 2794322-2793435 (Counterclockwise)

Preceding gene: 119898822

Following gene: 119898814

Centisome position: 63.86

GC content: 71.4

Gene sequence:

>888_bases
GTGCCCGACTTCGCGCTGTATGGCGAAACCGCGACCTCCGCGCTGGAGCTGATGCATATCGAGGAAATCGAACTGCGCAG
CAGCCTGTACGAATGGGAGATCGAGCCACATGTGCACCGCGGCCTCTATCAGGTGATCTGGGTGGGCGACGGCATGGCGC
AGGTGGCGCTGGACGAATGCCAGGAGCAGGTGGCGGGGCCGGCGGCCATCGTCATCCCGCCCGGTGCGGTGCATGGCTTC
CGCTTCGCGCCCGGCACCCAAGGCATGGTGCTCACGCTGGACGGCCGCTTCCTGGTGGAAGGCGATCTCGAAACCGCGGG
CGAATCCCTGCGCCAGCTCTTCGCCGCGCCGCGGCTGCTACGCCTGGACGGCGGCGAGGAGGGCGACGCCGCCACCGCGC
GCCGGCTGGACGGCCTGCTGCGCCAACTCGCCGAGGAATTCCCCGCGCCCGATGCCGCCGATGCGCCAGTGGCGCGCTGG
CTGGCGCAAGCGGTGGTGTGGCGGCTGGCGCAGGGCTGCGCGCGCAGCGTGTCGGCGGCGGCCGCCGGCAAGCGCGGCCG
CCATCACCAGGCACTGCTCACCCGCTTCCTGCTGCTGGTGGAGGAGAACTTCCTGGCGCATTGGCCGCTGTCGCGCTACG
CCGCGCAGCTCGGCCTCAGCACCCCCAGCCTCAACCGCCTGACGCGGGCCGCGAGCGGCCGCCCCGCGCTGGAATACCTC
CACGACCGCCTCACCCGCGAGGCCTGCCGCCGGCTGGTGTATACCGCGGCGCCGGTTAGCCGCATCGCGCTCGACCTCGG
CTTCGAAGACCCGGCCTACTTCTGCCGGTTTTTCAAGCGCCGAACCGGGGATAGCCCGAGTGGATACCGCGAGCGGCAGG
GGAGGTGA

Upstream 100 bases:

>100_bases
TTCGATCAAAACGGTTTCGCTTTTCACGGTGCGCCGCAGCATGACGACCCCTTCGCCCGCCGCCGTCCGGCGGCCTCTTT
CCGCCGCCCGCCAGCGCGCC

Downstream 100 bases:

>100_bases
GGAGGGCGGCGGGGCTGGTTGGGGTCTGGCCGACGCTGGGGGAAGGGCCTGGAGGATGGGGTTCGGCCACGCGCGGCGGG
TCACGTTTTTTATCAAACCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulatory Protein; AraC-Family Transcriptional Regulator; Regulator Of 4HPA-Hydroxylase Operon; PobR Regulator; AraC Family Transcription Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; Transcription Regulator; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MPDFALYGETATSALELMHIEEIELRSSLYEWEIEPHVHRGLYQVIWVGDGMAQVALDECQEQVAGPAAIVIPPGAVHGF
RFAPGTQGMVLTLDGRFLVEGDLETAGESLRQLFAAPRLLRLDGGEEGDAATARRLDGLLRQLAEEFPAPDAADAPVARW
LAQAVVWRLAQGCARSVSAAAAGKRGRHHQALLTRFLLLVEENFLAHWPLSRYAAQLGLSTPSLNRLTRAASGRPALEYL
HDRLTREACRRLVYTAAPVSRIALDLGFEDPAYFCRFFKRRTGDSPSGYRERQGR

Sequences:

>Translated_295_residues
MPDFALYGETATSALELMHIEEIELRSSLYEWEIEPHVHRGLYQVIWVGDGMAQVALDECQEQVAGPAAIVIPPGAVHGF
RFAPGTQGMVLTLDGRFLVEGDLETAGESLRQLFAAPRLLRLDGGEEGDAATARRLDGLLRQLAEEFPAPDAADAPVARW
LAQAVVWRLAQGCARSVSAAAAGKRGRHHQALLTRFLLLVEENFLAHWPLSRYAAQLGLSTPSLNRLTRAASGRPALEYL
HDRLTREACRRLVYTAAPVSRIALDLGFEDPAYFCRFFKRRTGDSPSGYRERQGR
>Mature_294_residues
PDFALYGETATSALELMHIEEIELRSSLYEWEIEPHVHRGLYQVIWVGDGMAQVALDECQEQVAGPAAIVIPPGAVHGFR
FAPGTQGMVLTLDGRFLVEGDLETAGESLRQLFAAPRLLRLDGGEEGDAATARRLDGLLRQLAEEFPAPDAADAPVARWL
AQAVVWRLAQGCARSVSAAAAGKRGRHHQALLTRFLLLVEENFLAHWPLSRYAAQLGLSTPSLNRLTRAASGRPALEYLH
DRLTREACRRLVYTAAPVSRIALDLGFEDPAYFCRFFKRRTGDSPSGYRERQGR

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32602; Mature: 32471

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDFALYGETATSALELMHIEEIELRSSLYEWEIEPHVHRGLYQVIWVGDGMAQVALDEC
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCHHHHHHHHH
QEQVAGPAAIVIPPGAVHGFRFAPGTQGMVLTLDGRFLVEGDLETAGESLRQLFAAPRLL
HHHHCCCEEEEECCCCCCCCEECCCCCCEEEEECCCEEEECCHHHHHHHHHHHHHCCCEE
RLDGGEEGDAATARRLDGLLRQLAEEFPAPDAADAPVARWLAQAVVWRLAQGCARSVSAA
EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AAGKRGRHHQALLTRFLLLVEENFLAHWPLSRYAAQLGLSTPSLNRLTRAASGRPALEYL
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHH
HDRLTREACRRLVYTAAPVSRIALDLGFEDPAYFCRFFKRRTGDSPSGYRERQGR
HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHCCCC
>Mature Secondary Structure 
PDFALYGETATSALELMHIEEIELRSSLYEWEIEPHVHRGLYQVIWVGDGMAQVALDEC
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCHHHHHHHHH
QEQVAGPAAIVIPPGAVHGFRFAPGTQGMVLTLDGRFLVEGDLETAGESLRQLFAAPRLL
HHHHCCCEEEEECCCCCCCCEECCCCCCEEEEECCCEEEECCHHHHHHHHHHHHHCCCEE
RLDGGEEGDAATARRLDGLLRQLAEEFPAPDAADAPVARWLAQAVVWRLAQGCARSVSAA
EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AAGKRGRHHQALLTRFLLLVEENFLAHWPLSRYAAQLGLSTPSLNRLTRAASGRPALEYL
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHH
HDRLTREACRRLVYTAAPVSRIALDLGFEDPAYFCRFFKRRTGDSPSGYRERQGR
HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA