Click here to switch to the map view.

The map label for this gene is ydhM [C]

Identifier: 119898771

GI number: 119898771

Start: 2739453

End: 2739998

Strand: Reverse

Name: ydhM [C]

Synonym: azo2480

Alternate gene names: 119898771

Gene position: 2739998-2739453 (Counterclockwise)

Preceding gene: 119898773

Following gene: 119898770

Centisome position: 62.61

GC content: 69.6

Gene sequence:

>546_bases
ATGACCAAGCAGGAACACCTGGTCGACAGCGCCATGCAGCTCTTTTACCGCCAGGGCTTCCACGCCACCGGCGTGGACCA
GTTGAGCAAGGAAGGCGAGGTCACCAAACGCACGCTCTACCGCTACTTCCCCACCAAGGAGGCGCTGGTGCGCGCGACGC
TGGAACACCGCGACACCCTCTTCATGGCGCGCATGCGCGCCGCGCTGGAGGCGAGGCCGCTGCCGGAACGGCCGGCCGCA
TACGTCGAGTTCGTCCTGGCGTGGACGCAGGAACCGGATTTTCACGGCTGCGCCTTCATCAACGCCGCGGCGGAGTATCC
CGCGGCCAGCGACGAGGCCCACGCGGTGGCGGCGGCGCACAAGCAAGCGATCCGGGCCTACCTCGAGCGCATCTGCAGCG
AGGCGGCCCTGGCCGATCCGCAGGCCGCCGCCCGACAGCTCTTCTTGCTCGGCGAAGGACTGACCGTCGCGGCCCAGGTT
GCCGGATACGACGAAGGGCTGGCGGAGACGGCTCGCGCGATGGCGGTCGCGCTCGGCCCGGGCTGA

Upstream 100 bases:

>100_bases
TATACAAAACTAAACCGATCTGTGTACTTTTGTCTACCGATCGGTTTACTTCGCCCGCCGCGCCCACCATACTGGAGCCA
TCACCCCTATCCCGATTGCC

Downstream 100 bases:

>100_bases
CGATTGCTGGGACCGTCCGGGCCCCGGCGCAGGGCGAGCGCTGCGCTCCTACTGCGATGGAAATAGGACGGCGGGAATGT
GATATACCTCCCGACTTCCT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein; TetR Family Regulatory Protein; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; Transcriptional Regulator Protein; Regulatory Protein TetR; Transcriptional Regulator Tetr Family; Transcription Regulator TetR; TetR-Family Protein Transcriptional Regulator; Tetr Family Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTKQEHLVDSAMQLFYRQGFHATGVDQLSKEGEVTKRTLYRYFPTKEALVRATLEHRDTLFMARMRAALEARPLPERPAA
YVEFVLAWTQEPDFHGCAFINAAAEYPAASDEAHAVAAAHKQAIRAYLERICSEAALADPQAAARQLFLLGEGLTVAAQV
AGYDEGLAETARAMAVALGPG

Sequences:

>Translated_181_residues
MTKQEHLVDSAMQLFYRQGFHATGVDQLSKEGEVTKRTLYRYFPTKEALVRATLEHRDTLFMARMRAALEARPLPERPAA
YVEFVLAWTQEPDFHGCAFINAAAEYPAASDEAHAVAAAHKQAIRAYLERICSEAALADPQAAARQLFLLGEGLTVAAQV
AGYDEGLAETARAMAVALGPG
>Mature_180_residues
TKQEHLVDSAMQLFYRQGFHATGVDQLSKEGEVTKRTLYRYFPTKEALVRATLEHRDTLFMARMRAALEARPLPERPAAY
VEFVLAWTQEPDFHGCAFINAAAEYPAASDEAHAVAAAHKQAIRAYLERICSEAALADPQAAARQLFLLGEGLTVAAQVA
GYDEGLAETARAMAVALGPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19795; Mature: 19663

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKQEHLVDSAMQLFYRQGFHATGVDQLSKEGEVTKRTLYRYFPTKEALVRATLEHRDTL
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
FMARMRAALEARPLPERPAAYVEFVLAWTQEPDFHGCAFINAAAEYPAASDEAHAVAAAH
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
KQAIRAYLERICSEAALADPQAAARQLFLLGEGLTVAAQVAGYDEGLAETARAMAVALGP
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCCC
G
C
>Mature Secondary Structure 
TKQEHLVDSAMQLFYRQGFHATGVDQLSKEGEVTKRTLYRYFPTKEALVRATLEHRDTL
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
FMARMRAALEARPLPERPAAYVEFVLAWTQEPDFHGCAFINAAAEYPAASDEAHAVAAAH
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
KQAIRAYLERICSEAALADPQAAARQLFLLGEGLTVAAQVAGYDEGLAETARAMAVALGP
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA