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The map label for this gene is pecT [H]

Identifier: 119898651

GI number: 119898651

Start: 2599708

End: 2600517

Strand: Direct

Name: pecT [H]

Synonym: azo2360

Alternate gene names: 119898651

Gene position: 2599708-2600517 (Clockwise)

Preceding gene: 119898647

Following gene: 119898656

Centisome position: 59.41

GC content: 70.49

Gene sequence:

>810_bases
GTGGTCGAACTCGGCAGCTTTACCCGCGCCGCCGAAGCCATGGGAACGACGCAGGCCGCGATCAGCATGAAACTGAAGCG
GCTGGAGGAAAGGCTGGGCTGCCGGCTGGTGGAGCGCACGCCGCGGTATGTCGAGATTTCCGCTTCCGGCGCGGCGTTTC
TGGAGCCGGCGCGACGGCTGCTGGAAGCCCACGAACGCGCCGCGGGCGTGTTCTCGCGGCAGCGCCAGCGGCTCGCAATC
GGCATCAGCGACCACGTGGCGGGGCCGGAACTGCCCGCGCTGATCGCGCGCATGAACGCGCTGGACCCGGAGCTGGTCAT
CGAGATCCGCATCGGCTCGTCGGCCGAACTGCTGCAACGCTTCGACCGCCGCGAACTCGATACCGTCATCGTGCGCTTCC
ATGCCGGACGCGACGACGGCGAGGTGGTCGCCGAAGAACAACTCGGCTGGTTTGCCGCGCCCGGATGGCAGCACCGGTCG
GACGAACCGCTGCCGATCGCGACGATGGCGGAGCCCTGCGGCGTCCGTTCGCTGGCCGCGCAACGGCTGGATGCGGCGGG
CCTCAGCTGGACGGAGATCTTCGTCGGCGGCGGCGTCACCGCGGTGTCGGCGGCGGTGATGGCGGGGCTGGGCATTGCCG
CGCTGGCCCCCCGCATGCTGCCGCCGGATGCGGTCAATGTCGGCGCAAAGCTGGGGCTGCCGGACCTACCCCGCCTGCCC
GTTCTGCTCCACACCCGCGTAAAGGACGGCCGCCCACGCGAAGCGCTGTCCGCGCTGTCGGCGGCGTTCAGGAGTTCGGT
ACGGAGCTAG

Upstream 100 bases:

>100_bases
TGCTAGTATCAGCGTCTGATATTTACCGACATTTCAGTAATAACAGATTCTGATGTCACTCCCGCCGCTGGACCTCGACG
CCGTCGATGCCTTCGTTCGC

Downstream 100 bases:

>100_bases
CCGGCCGCGCGGCGACACCGCGCCGCCCGGCTCCCTGCTCGCGCCCCCCCGTGCCATGACGCGGCGGGCGCTGCGCGTCG
CGCGCGGCGAGCGACAGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MVELGSFTRAAEAMGTTQAAISMKLKRLEERLGCRLVERTPRYVEISASGAAFLEPARRLLEAHERAAGVFSRQRQRLAI
GISDHVAGPELPALIARMNALDPELVIEIRIGSSAELLQRFDRRELDTVIVRFHAGRDDGEVVAEEQLGWFAAPGWQHRS
DEPLPIATMAEPCGVRSLAAQRLDAAGLSWTEIFVGGGVTAVSAAVMAGLGIAALAPRMLPPDAVNVGAKLGLPDLPRLP
VLLHTRVKDGRPREALSALSAAFRSSVRS

Sequences:

>Translated_269_residues
MVELGSFTRAAEAMGTTQAAISMKLKRLEERLGCRLVERTPRYVEISASGAAFLEPARRLLEAHERAAGVFSRQRQRLAI
GISDHVAGPELPALIARMNALDPELVIEIRIGSSAELLQRFDRRELDTVIVRFHAGRDDGEVVAEEQLGWFAAPGWQHRS
DEPLPIATMAEPCGVRSLAAQRLDAAGLSWTEIFVGGGVTAVSAAVMAGLGIAALAPRMLPPDAVNVGAKLGLPDLPRLP
VLLHTRVKDGRPREALSALSAAFRSSVRS
>Mature_269_residues
MVELGSFTRAAEAMGTTQAAISMKLKRLEERLGCRLVERTPRYVEISASGAAFLEPARRLLEAHERAAGVFSRQRQRLAI
GISDHVAGPELPALIARMNALDPELVIEIRIGSSAELLQRFDRRELDTVIVRFHAGRDDGEVVAEEQLGWFAAPGWQHRS
DEPLPIATMAEPCGVRSLAAQRLDAAGLSWTEIFVGGGVTAVSAAVMAGLGIAALAPRMLPPDAVNVGAKLGLPDLPRLP
VLLHTRVKDGRPREALSALSAAFRSSVRS

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=243, Percent_Identity=29.2181069958848, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787601, Length=160, Percent_Identity=28.75, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 28948; Mature: 28948

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVELGSFTRAAEAMGTTQAAISMKLKRLEERLGCRLVERTPRYVEISASGAAFLEPARRL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEECCCHHHHHHHHHH
LEAHERAAGVFSRQRQRLAIGISDHVAGPELPALIARMNALDPELVIEIRIGSSAELLQR
HHHHHHHHHHHHHHHHHEEEECHHCCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHH
FDRRELDTVIVRFHAGRDDGEVVAEEQLGWFAAPGWQHRSDEPLPIATMAEPCGVRSLAA
HHHHHHHHEEEEEECCCCCCCCHHHHHCCEEECCCCCCCCCCCCCCHHCCCCCCHHHHHH
QRLDAAGLSWTEIFVGGGVTAVSAAVMAGLGIAALAPRMLPPDAVNVGAKLGLPDLPRLP
HHHHHCCCCHHHEEECCCHHHHHHHHHHHCCHHHHCCCCCCCCHHCCCCCCCCCCCCCCC
VLLHTRVKDGRPREALSALSAAFRSSVRS
CEEEECCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVELGSFTRAAEAMGTTQAAISMKLKRLEERLGCRLVERTPRYVEISASGAAFLEPARRL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEECCCHHHHHHHHHH
LEAHERAAGVFSRQRQRLAIGISDHVAGPELPALIARMNALDPELVIEIRIGSSAELLQR
HHHHHHHHHHHHHHHHHEEEECHHCCCCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHH
FDRRELDTVIVRFHAGRDDGEVVAEEQLGWFAAPGWQHRSDEPLPIATMAEPCGVRSLAA
HHHHHHHHEEEEEECCCCCCCCHHHHHCCEEECCCCCCCCCCCCCCHHCCCCCCHHHHHH
QRLDAAGLSWTEIFVGGGVTAVSAAVMAGLGIAALAPRMLPPDAVNVGAKLGLPDLPRLP
HHHHHCCCCHHHEEECCCHHHHHHHHHHHCCHHHHCCCCCCCCHHCCCCCCCCCCCCCCC
VLLHTRVKDGRPREALSALSAAFRSSVRS
CEEEECCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]