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The map label for this gene is yckA [H]

Identifier: 119898556

GI number: 119898556

Start: 2481897

End: 2482550

Strand: Direct

Name: yckA [H]

Synonym: azo2265

Alternate gene names: 119898556

Gene position: 2481897-2482550 (Clockwise)

Preceding gene: 119898555

Following gene: 119898557

Centisome position: 56.72

GC content: 64.98

Gene sequence:

>654_bases
ATGTTCGTGCAATTCACCACCTGGGACATCGTCCGCAACCTGCTCGACGCCGGCAAATGGACGCTGGCGCTGTCGCTGAT
CGCCTTCGTGCTCGGCGGCATCGTCGGGCTGGCCATCCTGTTCGCCCGCATCTCCAAGAACCGCGCGCTGCAGGCCTTCA
CCAAGGGCTATATCGAGGTCTTCCAGGGCACGCCGCTGCTGATGCAGCTCTTCATCGTGTTCTTCGGCCTGTCGCTGCTG
GGCATCGACGTGTCGCCCTGGATCGCCGCCGCCGCGGGGCTGACGCTCTTCACCAGCGCCTACCTCGCCGAGATCTGGCG
CGGCTGCGTGGAAGCGGTGCCCAAGGGCCAGTGGGAGGCGTCGTCCAGCCTGGCGCTGTCCTACGCCCAGCAGATGCGCC
ATGTGATCCTGCCGCAGGCGCTGCGCATCGCGGTGGCGCCGACGGTCGGCTTCTCGGTGCAGGTGGTCAAGGGCACTGCG
GTCACCTCCATCATCGGTTTCGCCGAACTCACCAAGACGGGCTCGATGCTCGCCAATGCCACCTTCCAGCCCTTCATGGT
GTTCGGCCTGGTGGCGGCCGGCTACTTCGCCCTGTGTTATCCGCTCTCGCTGTACGCGAAAAGCCTGGAGAGGAAATTCC
ATGTCGCTCGTTAA

Upstream 100 bases:

>100_bases
CCTACTTCGTCACCACCGCGATCTACTTCGCGATGGCGCTGCTGATCCGCCAGCTGCTGATCCAGATCGGCCAACGCTAC
GTGGTCGGGAGGGCACGCTG

Downstream 100 bases:

>100_bases
CATCGCCGGCCTGCACAAGCACTTCGGCAGCAATCACGTATTGAAGGGCATCGACCTCGACGTCCAGCAAGGCGACGTCG
TCGCGCTGATCGGGCGCAGT

Product: amino acid permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MFVQFTTWDIVRNLLDAGKWTLALSLIAFVLGGIVGLAILFARISKNRALQAFTKGYIEVFQGTPLLMQLFIVFFGLSLL
GIDVSPWIAAAAGLTLFTSAYLAEIWRGCVEAVPKGQWEASSSLALSYAQQMRHVILPQALRIAVAPTVGFSVQVVKGTA
VTSIIGFAELTKTGSMLANATFQPFMVFGLVAAGYFALCYPLSLYAKSLERKFHVAR

Sequences:

>Translated_217_residues
MFVQFTTWDIVRNLLDAGKWTLALSLIAFVLGGIVGLAILFARISKNRALQAFTKGYIEVFQGTPLLMQLFIVFFGLSLL
GIDVSPWIAAAAGLTLFTSAYLAEIWRGCVEAVPKGQWEASSSLALSYAQQMRHVILPQALRIAVAPTVGFSVQVVKGTA
VTSIIGFAELTKTGSMLANATFQPFMVFGLVAAGYFALCYPLSLYAKSLERKFHVAR
>Mature_217_residues
MFVQFTTWDIVRNLLDAGKWTLALSLIAFVLGGIVGLAILFARISKNRALQAFTKGYIEVFQGTPLLMQLFIVFFGLSLL
GIDVSPWIAAAAGLTLFTSAYLAEIWRGCVEAVPKGQWEASSSLALSYAQQMRHVILPQALRIAVAPTVGFSVQVVKGTA
VTSIIGFAELTKTGSMLANATFQPFMVFGLVAAGYFALCYPLSLYAKSLERKFHVAR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=206, Percent_Identity=32.0388349514563, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=31.9047619047619, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082239, Length=209, Percent_Identity=33.9712918660287, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1788645, Length=202, Percent_Identity=31.6831683168317, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788646, Length=211, Percent_Identity=29.3838862559242, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787086, Length=215, Percent_Identity=26.5116279069767, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1786874, Length=208, Percent_Identity=26.9230769230769, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI48994930, Length=138, Percent_Identity=31.8840579710145, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786873, Length=207, Percent_Identity=26.0869565217391, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787087, Length=233, Percent_Identity=26.1802575107296, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23579; Mature: 23579

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVQFTTWDIVRNLLDAGKWTLALSLIAFVLGGIVGLAILFARISKNRALQAFTKGYIEV
CEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FQGTPLLMQLFIVFFGLSLLGIDVSPWIAAAAGLTLFTSAYLAEIWRGCVEAVPKGQWEA
HCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SSSLALSYAQQMRHVILPQALRIAVAPTVGFSVQVVKGTAVTSIIGFAELTKTGSMLANA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
TFQPFMVFGLVAAGYFALCYPLSLYAKSLERKFHVAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFVQFTTWDIVRNLLDAGKWTLALSLIAFVLGGIVGLAILFARISKNRALQAFTKGYIEV
CEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FQGTPLLMQLFIVFFGLSLLGIDVSPWIAAAAGLTLFTSAYLAEIWRGCVEAVPKGQWEA
HCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SSSLALSYAQQMRHVILPQALRIAVAPTVGFSVQVVKGTAVTSIIGFAELTKTGSMLANA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
TFQPFMVFGLVAAGYFALCYPLSLYAKSLERKFHVAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]