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The map label for this gene is gumB [C]

Identifier: 119898533

GI number: 119898533

Start: 2457567

End: 2458376

Strand: Reverse

Name: gumB [C]

Synonym: azo2242

Alternate gene names: 119898533

Gene position: 2458376-2457567 (Counterclockwise)

Preceding gene: 119898534

Following gene: 119898532

Centisome position: 56.18

GC content: 67.16

Gene sequence:

>810_bases
ATGTTCAACAAGCTCATCCGGTTTTCGCTGCTGTTCCTGGCATCCCTCGCGGCCAGCCTGCCTGCATTGGGCGCCTCGCC
GGCCGCCCAGCGCGAATACGTGCTCGGCGCGGGCGACGTGATCCGCATCAGCGTGTTCCAGAACCCCGATCTCGCGACCG
AGAGCCGGGTGTCGGAATCCGGCGCGATCACGTTTCCACTGATCGGCAGCGTCGAGGTCGGTGGCAAGAGCGTGCCGGCC
GCCGAACGCCTGATCGCCACCCGCTTGCGCGAAGGCGGTTTCGTGCAGCAGCCGCAGGTCAGCATCCTGCCGGTGGTGAT
GAAGGGCAACCAGGTGGCGGTGCTGGGGCAGGTGAACCGGCCCGGGCGCTATCCGCTGGAAACCTTCAACCTCAAGGTGT
CCGACCTGCTGGCGCTCGCCGGCGGGGTGGCGCCGCCGGGGGGCGACACCGCGGTGCTGGTGGGCTTTCGCGACGGCCAG
CCCATCCGCCAGGAAATCGACATCCCCACGCTGTTCGCCAACGGGGGTGAAACCGACGTGCTGCTGATGGGCGGCGACGT
GCTTTACGTGGACCGTGCCCCGGTGGCCTACATCTACGGCGAGGTCCAGCGACCGGGTGCGTTCCGGCTGGAACGCAACA
TGAGCGTGATGCAGGGGCTGGCCACCGGCGGCGGACCCACGCTGCGCGGCACGGTGCGCGGCCTCAATGTCCATCGCCGC
GAAGGCGATCAACTGAAAGTCTTCGAACCGGGGCTGGAGGAAATCCTGCGTCCGGATGACGTCATCTACGTCAAGGAAAG
CCTGTTCTGA

Upstream 100 bases:

>100_bases
GAGCCCACGGCGCTGCCCGCGGCCCGCCGCACGGCGGCCAACCAATAGCCGGTTTTCCGGGAAGCGAGCGCGCCGCGCTC
ACCGTTCGTTCGAGGTGATC

Downstream 100 bases:

>100_bases
CCAGGAGCGCGCCATGAGCATCCAGCAACTCTTTCTCGTCCTGCGCGCCAACCTGCGGCTCATCGCCAGCGTGCTGTGTG
CCGTCGTGGCGCTCGTGATG

Product: putative polysaccharide export protein

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MFNKLIRFSLLFLASLAASLPALGASPAAQREYVLGAGDVIRISVFQNPDLATESRVSESGAITFPLIGSVEVGGKSVPA
AERLIATRLREGGFVQQPQVSILPVVMKGNQVAVLGQVNRPGRYPLETFNLKVSDLLALAGGVAPPGGDTAVLVGFRDGQ
PIRQEIDIPTLFANGGETDVLLMGGDVLYVDRAPVAYIYGEVQRPGAFRLERNMSVMQGLATGGGPTLRGTVRGLNVHRR
EGDQLKVFEPGLEEILRPDDVIYVKESLF

Sequences:

>Translated_269_residues
MFNKLIRFSLLFLASLAASLPALGASPAAQREYVLGAGDVIRISVFQNPDLATESRVSESGAITFPLIGSVEVGGKSVPA
AERLIATRLREGGFVQQPQVSILPVVMKGNQVAVLGQVNRPGRYPLETFNLKVSDLLALAGGVAPPGGDTAVLVGFRDGQ
PIRQEIDIPTLFANGGETDVLLMGGDVLYVDRAPVAYIYGEVQRPGAFRLERNMSVMQGLATGGGPTLRGTVRGLNVHRR
EGDQLKVFEPGLEEILRPDDVIYVKESLF
>Mature_269_residues
MFNKLIRFSLLFLASLAASLPALGASPAAQREYVLGAGDVIRISVFQNPDLATESRVSESGAITFPLIGSVEVGGKSVPA
AERLIATRLREGGFVQQPQVSILPVVMKGNQVAVLGQVNRPGRYPLETFNLKVSDLLALAGGVAPPGGDTAVLVGFRDGQ
PIRQEIDIPTLFANGGETDVLLMGGDVLYVDRAPVAYIYGEVQRPGAFRLERNMSVMQGLATGGGPTLRGTVRGLNVHRR
EGDQLKVFEPGLEEILRPDDVIYVKESLF

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=267, Percent_Identity=24.3445692883895, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788376, Length=272, Percent_Identity=25, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 28753; Mature: 28753

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNKLIRFSLLFLASLAASLPALGASPAAQREYVLGAGDVIRISVFQNPDLATESRVSES
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHHHCCCC
GAITFPLIGSVEVGGKSVPAAERLIATRLREGGFVQQPQVSILPVVMKGNQVAVLGQVNR
CCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEEECCC
PGRYPLETFNLKVSDLLALAGGVAPPGGDTAVLVGFRDGQPIRQEIDIPTLFANGGETDV
CCCCCCCEECEEHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHCCCCEEEECCCCEEE
LLMGGDVLYVDRAPVAYIYGEVQRPGAFRLERNMSVMQGLATGGGPTLRGTVRGLNVHRR
EEECCCEEEECCCCEEEEEECCCCCCCEEEECCHHHHHHHCCCCCCEEEEEEECCEEECC
EGDQLKVFEPGLEEILRPDDVIYVKESLF
CCCEEEEECCCHHHHCCCCCEEEEECCCC
>Mature Secondary Structure
MFNKLIRFSLLFLASLAASLPALGASPAAQREYVLGAGDVIRISVFQNPDLATESRVSES
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHHHCCCC
GAITFPLIGSVEVGGKSVPAAERLIATRLREGGFVQQPQVSILPVVMKGNQVAVLGQVNR
CCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEEECCC
PGRYPLETFNLKVSDLLALAGGVAPPGGDTAVLVGFRDGQPIRQEIDIPTLFANGGETDV
CCCCCCCEECEEHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHCCCCEEEECCCCEEE
LLMGGDVLYVDRAPVAYIYGEVQRPGAFRLERNMSVMQGLATGGGPTLRGTVRGLNVHRR
EEECCCEEEECCCCEEEEEECCCCCCCEEEECCHHHHHHHCCCCCCEEEEEEECCEEECC
EGDQLKVFEPGLEEILRPDDVIYVKESLF
CCCEEEEECCCHHHHCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896702 [H]