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The map label for this gene is sndH

Identifier: 119898439

GI number: 119898439

Start: 2350311

End: 2351624

Strand: Reverse

Name: sndH

Synonym: azo2148

Alternate gene names: NA

Gene position: 2351624-2350311 (Counterclockwise)

Preceding gene: 119898440

Following gene: 119898437

Centisome position: 53.74

GC content: 68.42

Gene sequence:

>1314_bases
ATGCAAACGAAACTGTGTGTGCTGCTTGCCGGCGGGGCGGCGCTGCTCAACGCGTGCGGCGAGATGGAGACCCAGCCGGT
GGAGGCGGGCATGGGCGCAACGCCCAAGCTGGTGGAGCCACGCAAGACGCTGCTGCCTACCGTCAATGTGGCGGAAGCCA
AGGGCTGGCCGACCGGAACCATGCCCCAACCCGCGCCCGGCTTGAGCGTTGCAGCCTTCGCCGACGGCCTCGATCACCCG
CGCTGGCTCCACGTGCTGCCCAACGGCGACGTGCTGGTGGCCGAAACCAATGCGCCCGAGAAAAAGGGCGGCGCTGGCGG
CGTCCGCAAGTGGGTGATGAAGCAGGTGATGAAGCGTGCCGGGGCCGGCGTTCCGAGCGCCAATCGCATCACCCTGCTGC
GCGATACCGACGGCGACGGCAAGGCGGACCTTCGCTCCCCGCTGCTCGAGGGGTTGAACTCGCCGTTCGGCATGGCGCTG
GTAGGCGGGTCGCTCTACGTCGCCAACACCGACGCGGTGGTGCGCTTTCCGTACAAGACGGGTGACACGAAGATCGAAAC
AGCTGGGGAGAAGATTGTCGATCTCCCCGCTGGCGAACTGAACCACCACTGGACCAAGGACCTGATCGCGAGCCCCGACG
GCCGGTTGCTGTACGCCACCGTCGGCTCCAACAGCAATGTCGCCGAGCACGGCATGGAGATGGAGGAGGGCCGCGCCGCG
GTCCACGAGATCGACCCCGAAGCCCGCACCATGCGGCTGTTCGCGTCCGGACTGCGCAACCCCAACGGGCTGGCCTGGGA
GCCCCGCAGCGGCGCGCTGTGGGTGGCGGTGAATGAGCGCGACGAGCTGGGCAGCGACCTCGTACCCGATTACATGACCT
CCGTGACCGACGGCGCCTTCTACGGCTGGCCTTACAGCTATTACGGCCAACATGTCGACACCCGGGCGAAGCCGCCGCGC
CCGGATCTCGTCGCGAGGGCGCGCGTGCCCGACTACGCGCTCGGCGCTCACACCGCCTCGCTGGGTTTGACCTTCTATCA
GGGCGAGGCGCTTCCCGCGCGCTACGCCGGCGGGGCTTTCGTCGGCCAGCATGGCTCCTGGAACCGCAAGCCGCGCAGCG
GTTACAAGGTCGTCTTCGTGCCCTTTGCCGACGGCCAGCCGTCCGGGTTGCCCGAGGACGTCCTTACCGGATTCGTGAAT
GACAGGGACGAGGCTCTGGGCCGGCCGGTCGGCGTGGCCGTGGATAAGGCGGGGGCGCTGCTGGTCGCCGACGACGTCGG
CAATGTGGTCTGGCGGGTGACAGCCGCGCGCTAG

Upstream 100 bases:

>100_bases
GGTCCGCACAAGGCGGAAGTCCGTTTCCGCCCGCATCGCGCGAACCCGCGCGGGGGATCACAGTCGTACCTTGCATTGCG
GCGGCCCGACGGGGTGTGTG

Downstream 100 bases:

>100_bases
CCTGGGTGCGAAGCAGTTCGGCGCCGCGGGACGACGAGCAGGCCGAGCAACGCGGCGCCTAGGACGGCGAGCGCGCCAGG
TTCGGCCACCACCGCGGTGA

Product: putative L-sorbosone dehydrogenase

Products: NA

Alternate protein names: SNDH [H]

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MQTKLCVLLAGGAALLNACGEMETQPVEAGMGATPKLVEPRKTLLPTVNVAEAKGWPTGTMPQPAPGLSVAAFADGLDHP
RWLHVLPNGDVLVAETNAPEKKGGAGGVRKWVMKQVMKRAGAGVPSANRITLLRDTDGDGKADLRSPLLEGLNSPFGMAL
VGGSLYVANTDAVVRFPYKTGDTKIETAGEKIVDLPAGELNHHWTKDLIASPDGRLLYATVGSNSNVAEHGMEMEEGRAA
VHEIDPEARTMRLFASGLRNPNGLAWEPRSGALWVAVNERDELGSDLVPDYMTSVTDGAFYGWPYSYYGQHVDTRAKPPR
PDLVARARVPDYALGAHTASLGLTFYQGEALPARYAGGAFVGQHGSWNRKPRSGYKVVFVPFADGQPSGLPEDVLTGFVN
DRDEALGRPVGVAVDKAGALLVADDVGNVVWRVTAAR

Sequences:

>Translated_437_residues
MQTKLCVLLAGGAALLNACGEMETQPVEAGMGATPKLVEPRKTLLPTVNVAEAKGWPTGTMPQPAPGLSVAAFADGLDHP
RWLHVLPNGDVLVAETNAPEKKGGAGGVRKWVMKQVMKRAGAGVPSANRITLLRDTDGDGKADLRSPLLEGLNSPFGMAL
VGGSLYVANTDAVVRFPYKTGDTKIETAGEKIVDLPAGELNHHWTKDLIASPDGRLLYATVGSNSNVAEHGMEMEEGRAA
VHEIDPEARTMRLFASGLRNPNGLAWEPRSGALWVAVNERDELGSDLVPDYMTSVTDGAFYGWPYSYYGQHVDTRAKPPR
PDLVARARVPDYALGAHTASLGLTFYQGEALPARYAGGAFVGQHGSWNRKPRSGYKVVFVPFADGQPSGLPEDVLTGFVN
DRDEALGRPVGVAVDKAGALLVADDVGNVVWRVTAAR
>Mature_437_residues
MQTKLCVLLAGGAALLNACGEMETQPVEAGMGATPKLVEPRKTLLPTVNVAEAKGWPTGTMPQPAPGLSVAAFADGLDHP
RWLHVLPNGDVLVAETNAPEKKGGAGGVRKWVMKQVMKRAGAGVPSANRITLLRDTDGDGKADLRSPLLEGLNSPFGMAL
VGGSLYVANTDAVVRFPYKTGDTKIETAGEKIVDLPAGELNHHWTKDLIASPDGRLLYATVGSNSNVAEHGMEMEEGRAA
VHEIDPEARTMRLFASGLRNPNGLAWEPRSGALWVAVNERDELGSDLVPDYMTSVTDGAFYGWPYSYYGQHVDTRAKPPR
PDLVARARVPDYALGAHTASLGLTFYQGEALPARYAGGAFVGQHGSWNRKPRSGYKVVFVPFADGQPSGLPEDVLTGFVN
DRDEALGRPVGVAVDKAGALLVADDVGNVVWRVTAAR

Specific function: Converts L-sorbosone into 2-keto-L-gulonic acid (2KGA) [H]

COG id: COG2133

COG function: function code G; Glucose/sorbosone dehydrogenases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.burgdorferi BB024 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011042
- InterPro:   IPR012938
- InterPro:   IPR011041 [H]

Pfam domain/function: PF07995 GSDH [H]

EC number: NA

Molecular weight: Translated: 46477; Mature: 46477

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTKLCVLLAGGAALLNACGEMETQPVEAGMGATPKLVEPRKTLLPTVNVAEAKGWPTGT
CCCEEEEEEECCHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHHCCCCEEHHCCCCCCCC
MPQPAPGLSVAAFADGLDHPRWLHVLPNGDVLVAETNAPEKKGGAGGVRKWVMKQVMKRA
CCCCCCCCCHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
GAGVPSANRITLLRDTDGDGKADLRSPLLEGLNSPFGMALVGGSLYVANTDAVVRFPYKT
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCEEEEECCCEEEEEECCC
GDTKIETAGEKIVDLPAGELNHHWTKDLIASPDGRLLYATVGSNSNVAEHGMEMEEGRAA
CCCEEECCCCEEEECCCCCCCCCHHHHHHCCCCCCEEEEEECCCCCHHHHCCCHHHCCHH
VHEIDPEARTMRLFASGLRNPNGLAWEPRSGALWVAVNERDELGSDLVPDYMTSVTDGAF
HHHCCCHHHHHHHHHHHCCCCCCCEECCCCCEEEEEECCHHHCCCCCCHHHHHHHCCCCE
YGWPYSYYGQHVDTRAKPPRPDLVARARVPDYALGAHTASLGLTFYQGEALPARYAGGAF
ECCCHHHHCCCCCCCCCCCCCCCEEECCCCCCHHCCCHHHHEEEEEECCCCCCHHCCCEE
VGQHGSWNRKPRSGYKVVFVPFADGQPSGLPEDVLTGFVNDRDEALGRPVGVAVDKAGAL
EECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHCCCCEEEEECCCEE
LVADDVGNVVWRVTAAR
EEEECCCCEEEEEEECC
>Mature Secondary Structure
MQTKLCVLLAGGAALLNACGEMETQPVEAGMGATPKLVEPRKTLLPTVNVAEAKGWPTGT
CCCEEEEEEECCHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHHCCCCEEHHCCCCCCCC
MPQPAPGLSVAAFADGLDHPRWLHVLPNGDVLVAETNAPEKKGGAGGVRKWVMKQVMKRA
CCCCCCCCCHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
GAGVPSANRITLLRDTDGDGKADLRSPLLEGLNSPFGMALVGGSLYVANTDAVVRFPYKT
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCEEEEECCCEEEEEECCC
GDTKIETAGEKIVDLPAGELNHHWTKDLIASPDGRLLYATVGSNSNVAEHGMEMEEGRAA
CCCEEECCCCEEEECCCCCCCCCHHHHHHCCCCCCEEEEEECCCCCHHHHCCCHHHCCHH
VHEIDPEARTMRLFASGLRNPNGLAWEPRSGALWVAVNERDELGSDLVPDYMTSVTDGAF
HHHCCCHHHHHHHHHHHCCCCCCCEECCCCCEEEEEECCHHHCCCCCCHHHHHHHCCCCE
YGWPYSYYGQHVDTRAKPPRPDLVARARVPDYALGAHTASLGLTFYQGEALPARYAGGAF
ECCCHHHHCCCCCCCCCCCCCCCEEECCCCCCHHCCCHHHHEEEEEECCCCCCHHCCCEE
VGQHGSWNRKPRSGYKVVFVPFADGQPSGLPEDVLTGFVNDRDEALGRPVGVAVDKAGAL
EECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHCCCCEEEEECCCEE
LVADDVGNVVWRVTAAR
EEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7574579 [H]