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The map label for this gene is cspA [H]

Identifier: 119898412

GI number: 119898412

Start: 2326914

End: 2327123

Strand: Direct

Name: cspA [H]

Synonym: azo2121

Alternate gene names: 119898412

Gene position: 2326914-2327123 (Clockwise)

Preceding gene: 119898410

Following gene: 119898413

Centisome position: 53.17

GC content: 57.14

Gene sequence:

>210_bases
ATGAGCACTCAAACCGGTACCGTCAAATGGTTCAACGACGCCAAGGGCTTCGGCTTCATCACTCCGGAAAACGGCGGTGA
CGACCTGTTCGCCCATTTCAGCGAAATCCAAAGCAGCGGCTTCAAGTCGCTCGCTGAAAACCAGCGCGTCGAATTCGAAG
TCAAGTCGGGCCCCAAGGGTCTGCAAGCGGCGAAGATTCGCCCGCTCTGA

Upstream 100 bases:

>100_bases
TCCGGTTCCGAACCTTCCGGTCTGATTCCCTCGATACGTTTCTTGATCGCTCCTGCACGTTGGGGCGCAAGCCTTATTTT
CATATCATCGGAACGAAAGA

Downstream 100 bases:

>100_bases
TCCGGCTTTCCGCCGTATCTGACAAAACGCGGCCTTGTGCCGCGTTTTTCATTTTCCGTCACCCGGAACGCCGCCTGCCG
ATTTCCCCAATGCAACCGGG

Product: cold shock-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSTQTGTVKWFNDAKGFGFITPENGGDDLFAHFSEIQSSGFKSLAENQRVEFEVKSGPKGLQAAKIRPL

Sequences:

>Translated_69_residues
MSTQTGTVKWFNDAKGFGFITPENGGDDLFAHFSEIQSSGFKSLAENQRVEFEVKSGPKGLQAAKIRPL
>Mature_68_residues
STQTGTVKWFNDAKGFGFITPENGGDDLFAHFSEIQSSGFKSLAENQRVEFEVKSGPKGLQAAKIRPL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=62.3188405797101, Blast_Score=93, Evalue=4e-21,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=57.5757575757576, Blast_Score=88, Evalue=9e-20,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=59.0909090909091, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=55.0724637681159, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=56.0606060606061, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=55.3846153846154, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=52.3809523809524, Blast_Score=74, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24658520, Length=65, Percent_Identity=49.2307692307692, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7550; Mature: 7418

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQTGTVKWFNDAKGFGFITPENGGDDLFAHFSEIQSSGFKSLAENQRVEFEVKSGPKG
CCCCCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHCCCHHHHCCCEEEEEECCCCCC
LQAAKIRPL
CCCCCCCCC
>Mature Secondary Structure 
STQTGTVKWFNDAKGFGFITPENGGDDLFAHFSEIQSSGFKSLAENQRVEFEVKSGPKG
CCCCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHCCCHHHHCCCEEEEEECCCCCC
LQAAKIRPL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12910271 [H]