Click here to switch to the map view.

The map label for this gene is yafS [H]

Identifier: 119898347

GI number: 119898347

Start: 2256308

End: 2257072

Strand: Reverse

Name: yafS [H]

Synonym: azo2056

Alternate gene names: 119898347

Gene position: 2257072-2256308 (Counterclockwise)

Preceding gene: 119898349

Following gene: 119898346

Centisome position: 51.58

GC content: 65.23

Gene sequence:

>765_bases
ATGCTCGATATTCTGAAGTCCGATCCGCGCATGTCAATCCTCAGTCTCTCGGACTGGCTGGACACCCCGCAGGGGCGTTA
TCTGATCGAGTGGGAGCAGGCCCGGCTGGATGCGATCGTGGCGGATATCTTCGGCTACAACGCAGTACAGATCGGCCTCG
CCGGGCTCGATTGCCTGCGCGCCAACCGCATGCCGTTCCGGTTTGCCTGTGGCCGGACCGGACGCGTCGCAGTGGTGTCC
AGGTCCGACGAGCTACCGTTCGCCACCGCCAGCCTCGATCTCGTGGTCCTTCCGCACGTGCTGGAGTTCGCCCGGCGCCC
CCACCATGTGTTACGGGAAGTCGAAAGGGTGCTGGTGCCGGAGGGAAGCGTCGTCATCACCGGCTTCAACCCCTTCAGCC
TGTGGGGGTTGAGACGGCTTGCGGCACGCAGGAACGGCGAGCTGCCCTGGCAGGGGCAATACCTGTCGGCGCTGCGGGTC
AAGGACTGGCTGACGCTGCTCGGCTTCGAATCGCAAGGAGCGGGCTTCGGCTGTTACATCCCGGCGGTGAGCAGGCCGGA
GTGGATAGAGCGCTGGCGCTTCATGGACCGGGCCGGCGTGCGCTGGTGGCCCGTGTGCGGCGCAGCGTATGCGATGCAGG
GCATCAAACGGGTGCAGGGAATGCGGTTATTGACGCCGAACTGGCGCGAGAAGAAAGCAACCGGCAAGCAATTGTCGACG
GTCGCGCAGCGGGATTCCGCCGCGGGCCGAGCAAGGACACAGTGA

Upstream 100 bases:

>100_bases
CACTGGCGCAGCGTCGCCTGGATCGACGACCACAGCACGATGATCGTCGTGCAGGACCCAAATGTAGTTATCGCGGAAGG
CCGGAAGAGGGATAATCTGC

Downstream 100 bases:

>100_bases
ATGGAAGAAGTCGACATCTATACCGATGGAGCCTGCAGCGGAAATCCCGGCCCCGGCGGCTGGGGCGCGATCCTGCGCTC
CAACGGGCATGAGAAGGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MLDILKSDPRMSILSLSDWLDTPQGRYLIEWEQARLDAIVADIFGYNAVQIGLAGLDCLRANRMPFRFACGRTGRVAVVS
RSDELPFATASLDLVVLPHVLEFARRPHHVLREVERVLVPEGSVVITGFNPFSLWGLRRLAARRNGELPWQGQYLSALRV
KDWLTLLGFESQGAGFGCYIPAVSRPEWIERWRFMDRAGVRWWPVCGAAYAMQGIKRVQGMRLLTPNWREKKATGKQLST
VAQRDSAAGRARTQ

Sequences:

>Translated_254_residues
MLDILKSDPRMSILSLSDWLDTPQGRYLIEWEQARLDAIVADIFGYNAVQIGLAGLDCLRANRMPFRFACGRTGRVAVVS
RSDELPFATASLDLVVLPHVLEFARRPHHVLREVERVLVPEGSVVITGFNPFSLWGLRRLAARRNGELPWQGQYLSALRV
KDWLTLLGFESQGAGFGCYIPAVSRPEWIERWRFMDRAGVRWWPVCGAAYAMQGIKRVQGMRLLTPNWREKKATGKQLST
VAQRDSAAGRARTQ
>Mature_254_residues
MLDILKSDPRMSILSLSDWLDTPQGRYLIEWEQARLDAIVADIFGYNAVQIGLAGLDCLRANRMPFRFACGRTGRVAVVS
RSDELPFATASLDLVVLPHVLEFARRPHHVLREVERVLVPEGSVVITGFNPFSLWGLRRLAARRNGELPWQGQYLSALRV
KDWLTLLGFESQGAGFGCYIPAVSRPEWIERWRFMDRAGVRWWPVCGAAYAMQGIKRVQGMRLLTPNWREKKATGKQLST
VAQRDSAAGRARTQ

Specific function: Unknown

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081700, Length=162, Percent_Identity=32.0987654320988, Blast_Score=87, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 28751; Mature: 28751

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDILKSDPRMSILSLSDWLDTPQGRYLIEWEQARLDAIVADIFGYNAVQIGLAGLDCLR
CCCCCCCCCCEEEEEHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEHHHHHHHH
ANRMPFRFACGRTGRVAVVSRSDELPFATASLDLVVLPHVLEFARRPHHVLREVERVLVP
CCCCCEEEECCCCCCEEEEECCCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC
EGSVVITGFNPFSLWGLRRLAARRNGELPWQGQYLSALRVKDWLTLLGFESQGAGFGCYI
CCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEC
PAVSRPEWIERWRFMDRAGVRWWPVCGAAYAMQGIKRVQGMRLLTPNWREKKATGKQLST
CCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHH
VAQRDSAAGRARTQ
HHHHHCCCCCCCCC
>Mature Secondary Structure
MLDILKSDPRMSILSLSDWLDTPQGRYLIEWEQARLDAIVADIFGYNAVQIGLAGLDCLR
CCCCCCCCCCEEEEEHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEHHHHHHHH
ANRMPFRFACGRTGRVAVVSRSDELPFATASLDLVVLPHVLEFARRPHHVLREVERVLVP
CCCCCEEEECCCCCCEEEEECCCCCCEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC
EGSVVITGFNPFSLWGLRRLAARRNGELPWQGQYLSALRVKDWLTLLGFESQGAGFGCYI
CCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEC
PAVSRPEWIERWRFMDRAGVRWWPVCGAAYAMQGIKRVQGMRLLTPNWREKKATGKQLST
CCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHH
VAQRDSAAGRARTQ
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]