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The map label for this gene is bphS [H]

Identifier: 119898260

GI number: 119898260

Start: 2166074

End: 2166811

Strand: Direct

Name: bphS [H]

Synonym: azo1969

Alternate gene names: 119898260

Gene position: 2166074-2166811 (Clockwise)

Preceding gene: 119898244

Following gene: 119898269

Centisome position: 49.5

GC content: 71.54

Gene sequence:

>738_bases
ATGCCGCTCGAATCCCTGCTTTCCGCCGTTTCATCCGCCTCCGCCGAGCCGCCCTCCACGCTGATCGAGGCGGCGTACCG
CCAGATCCGGCGCGACATCGTGCTGGGCGTTCATCCGCCCGGCGAACGGCTGCGCATCGAGCAGCTCAAGACGCGCTACG
CGGCCAGTTCCGGCACGCTGCGCGAGGCGCTCGCCCTGCTGGTGTCCGACGACCTGGTGGTGGCGCAGGGACAGCGCGGG
TTCTCGGTGGCGCCGATGTCGCTGGAGGACCTGACCGATCTCTCCTACGTGCGCTCGCTGGTGGAGGCGGAGGCCGCGCG
GCAAAGCCTGCTGCGCGGCGACGACGACTGGGAGGCGCGCCTCGTCAGCGCCTTTCACAAGCTCACGCGCACCGAGGAGC
GCCTGGCTGCCCGCACCGCCGATGTCTATGAGGAGTGGGAGCTGCGCAACTTCGAATTCCACGAGGCGCTGGTGTCCGCC
TGCGGCTCTCCCCGGCTGCTCAGCCTGCGCGCCATGCTCCACCTGCAGGCCGAGCGCTACCGGCGGGTGTCGGCCTTGTC
CGGGCCGCGGCCGGGCTCGGTGCATGCGGAGCACGAGCAGATCTTCACGCTGGCGCTCGCGCGCAAGGGCGACGCCCTGG
CCGAGGTGATCGGCCAGCACGTCCGCCGCTCGCTCGACGTGATCCGCAACAGCGGCTTGCTGAGCGCGCGTGCGCAGGAC
GGCGGCGAGGCGGCCTGA

Upstream 100 bases:

>100_bases
TTAAATTAGAAAAAAATTTTTAATTAGATTGTCTTTTGTTCGTAGTGTTGTCAACACGCGCTTGATATGATTTCGGCACC
TGCTTCCGACCCCGCCCGCA

Downstream 100 bases:

>100_bases
GCTGCGCCGGGCGCGGTCCGCTCAGCCCGATTCGGCGCCAATCAGCGTGAATAACAGCCGCGCCGGCTTGCTGCCGCGGT
TGCGCCAGGCGTGCCGCGTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MPLESLLSAVSSASAEPPSTLIEAAYRQIRRDIVLGVHPPGERLRIEQLKTRYAASSGTLREALALLVSDDLVVAQGQRG
FSVAPMSLEDLTDLSYVRSLVEAEAARQSLLRGDDDWEARLVSAFHKLTRTEERLAARTADVYEEWELRNFEFHEALVSA
CGSPRLLSLRAMLHLQAERYRRVSALSGPRPGSVHAEHEQIFTLALARKGDALAEVIGQHVRRSLDVIRNSGLLSARAQD
GGEAA

Sequences:

>Translated_245_residues
MPLESLLSAVSSASAEPPSTLIEAAYRQIRRDIVLGVHPPGERLRIEQLKTRYAASSGTLREALALLVSDDLVVAQGQRG
FSVAPMSLEDLTDLSYVRSLVEAEAARQSLLRGDDDWEARLVSAFHKLTRTEERLAARTADVYEEWELRNFEFHEALVSA
CGSPRLLSLRAMLHLQAERYRRVSALSGPRPGSVHAEHEQIFTLALARKGDALAEVIGQHVRRSLDVIRNSGLLSARAQD
GGEAA
>Mature_244_residues
PLESLLSAVSSASAEPPSTLIEAAYRQIRRDIVLGVHPPGERLRIEQLKTRYAASSGTLREALALLVSDDLVVAQGQRGF
SVAPMSLEDLTDLSYVRSLVEAEAARQSLLRGDDDWEARLVSAFHKLTRTEERLAARTADVYEEWELRNFEFHEALVSAC
GSPRLLSLRAMLHLQAERYRRVSALSGPRPGSVHAEHEQIFTLALARKGDALAEVIGQHVRRSLDVIRNSGLLSARAQDG
GEAA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=210, Percent_Identity=35.7142857142857, Blast_Score=120, Evalue=9e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26959; Mature: 26828

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLESLLSAVSSASAEPPSTLIEAAYRQIRRDIVLGVHPPGERLRIEQLKTRYAASSGTL
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCHH
REALALLVSDDLVVAQGQRGFSVAPMSLEDLTDLSYVRSLVEAEAARQSLLRGDDDWEAR
HHHHHHHHCCCEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LVSAFHKLTRTEERLAARTADVYEEWELRNFEFHEALVSACGSPRLLSLRAMLHLQAERY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
RRVSALSGPRPGSVHAEHEQIFTLALARKGDALAEVIGQHVRRSLDVIRNSGLLSARAQD
HHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCC
GGEAA
CCCCC
>Mature Secondary Structure 
PLESLLSAVSSASAEPPSTLIEAAYRQIRRDIVLGVHPPGERLRIEQLKTRYAASSGTL
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCHH
REALALLVSDDLVVAQGQRGFSVAPMSLEDLTDLSYVRSLVEAEAARQSLLRGDDDWEAR
HHHHHHHHCCCEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LVSAFHKLTRTEERLAARTADVYEEWELRNFEFHEALVSACGSPRLLSLRAMLHLQAERY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
RRVSALSGPRPGSVHAEHEQIFTLALARKGDALAEVIGQHVRRSLDVIRNSGLLSARAQD
HHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCC
GGEAA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1569021 [H]