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The map label for this gene is yjfH [C]

Identifier: 119898184

GI number: 119898184

Start: 2077881

End: 2078672

Strand: Reverse

Name: yjfH [C]

Synonym: azo1893

Alternate gene names: 119898184

Gene position: 2078672-2077881 (Counterclockwise)

Preceding gene: 119898185

Following gene: 119898178

Centisome position: 47.5

GC content: 69.95

Gene sequence:

>792_bases
ATGAAATCGATCACCTCGCGCGACAATCCGGCGGTCAAGCACCTGCACGGACTCGCCCATAACGCGCGCGACCGCCGCAA
AGCGGGCGAAACCCTGTTCGATGGCCCCCATCTGATCGGCGCGGCACTCGACGCAGGCTGGCCCCTGAAGCGCCTGGTGG
TCTCCGAGAGCGGCTACGCCCGCGCGGAAATCCGCAGCCTGCTCGAACGCGCACCGGCCACCATTCCCGCGCTCAAGCTC
GACGACAGCCTCGTCGCGCATGTCAGTCCGGTCGATACGCCCACCGGCATCCTTGCGGTTGCGGATATCCCGCCCGCGGC
GCCCGCACCGGCCGCCGGTGCTTCGCTGGTGGTGCTCGACGGCGTGCAAGATCCGGGCAACCTCGGCACCATCCTGCGCA
CTGCGGCCGCGGCGGGCGTGGAAGATGTCGTCCTGACCGGCGGCTGCGCGCAGCCTTGGTCACCGCGCACACTGCGGGCC
GGCATGGGCGCGCATTTCCACCTGCGTATCCACGAATGCACCGACCTGGCCGGGCTTCTTGCCACTTACCCGGGGGCGGT
GCTTGCGACCGCGCTCGACGCACGGGCGAAGTCGCTTTACGAAACCGATCTGCGCGGCCCGGTCGCATGGCTGTTCGGGG
CCGAAGGGCAGGGCCTGAGCGAAGCGGCGAAGGCGCTCGCAACCGGTACCGTGCTGATTCCGATGGCGGCGGGGATCGAA
TCCCTCAACGTCGCGGCGGCGGCCGCGGTGTGCCTGTTCGAACAGCGCCGCCAGCGCGCTGCGCGAGGCTGA

Upstream 100 bases:

>100_bases
TCGCCATGCAACGCATCCGCGCACGCGTTGCCTTCAATCTCGCCCTCGGCATCGCCACCATCGCACTGGCCACACTCGGC
CTCGGTTGGTAGGCGCAGGC

Downstream 100 bases:

>100_bases
ATCCTCAGCCCGGCAGCACCAGCCGGCCGGCAACCGCCGCCGCATCGCGATCCGGCTGGTGAGGCAGCACGCCGAGCAGT
GGCGCGGTGATCCCGGCTCG

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKSITSRDNPAVKHLHGLAHNARDRRKAGETLFDGPHLIGAALDAGWPLKRLVVSESGYARAEIRSLLERAPATIPALKL
DDSLVAHVSPVDTPTGILAVADIPPAAPAPAAGASLVVLDGVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRA
GMGAHFHLRIHECTDLAGLLATYPGAVLATALDARAKSLYETDLRGPVAWLFGAEGQGLSEAAKALATGTVLIPMAAGIE
SLNVAAAAAVCLFEQRRQRAARG

Sequences:

>Translated_263_residues
MKSITSRDNPAVKHLHGLAHNARDRRKAGETLFDGPHLIGAALDAGWPLKRLVVSESGYARAEIRSLLERAPATIPALKL
DDSLVAHVSPVDTPTGILAVADIPPAAPAPAAGASLVVLDGVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRA
GMGAHFHLRIHECTDLAGLLATYPGAVLATALDARAKSLYETDLRGPVAWLFGAEGQGLSEAAKALATGTVLIPMAAGIE
SLNVAAAAAVCLFEQRRQRAARG
>Mature_263_residues
MKSITSRDNPAVKHLHGLAHNARDRRKAGETLFDGPHLIGAALDAGWPLKRLVVSESGYARAEIRSLLERAPATIPALKL
DDSLVAHVSPVDTPTGILAVADIPPAAPAPAAGASLVVLDGVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRA
GMGAHFHLRIHECTDLAGLLATYPGAVLATALDARAKSLYETDLRGPVAWLFGAEGQGLSEAAKALATGTVLIPMAAGIE
SLNVAAAAAVCLFEQRRQRAARG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=298, Percent_Identity=30.2013422818792, Blast_Score=103, Evalue=2e-22,
Organism=Escherichia coli, GI1790623, Length=148, Percent_Identity=35.1351351351351, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1790083, Length=148, Percent_Identity=32.4324324324324, Blast_Score=73, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24666840, Length=282, Percent_Identity=30.8510638297872, Blast_Score=100, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27135; Mature: 27135

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSITSRDNPAVKHLHGLAHNARDRRKAGETLFDGPHLIGAALDAGWPLKRLVVSESGYA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHEECCCCCH
RAEIRSLLERAPATIPALKLDDSLVAHVSPVDTPTGILAVADIPPAAPAPAAGASLVVLD
HHHHHHHHHHCCCCCCEEECCCCHHEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEE
GVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRAGMGAHFHLRIHECTDLAGLL
CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHCCCCEEEEEEECHHHHHHHH
ATYPGAVLATALDARAKSLYETDLRGPVAWLFGAEGQGLSEAAKALATGTVLIPMAAGIE
HHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEHHCCCH
SLNVAAAAAVCLFEQRRQRAARG
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSITSRDNPAVKHLHGLAHNARDRRKAGETLFDGPHLIGAALDAGWPLKRLVVSESGYA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHEECCCCCH
RAEIRSLLERAPATIPALKLDDSLVAHVSPVDTPTGILAVADIPPAAPAPAAGASLVVLD
HHHHHHHHHHCCCCCCEEECCCCHHEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEE
GVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRAGMGAHFHLRIHECTDLAGLL
CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHCCCCEEEEEEECHHHHHHHH
ATYPGAVLATALDARAKSLYETDLRGPVAWLFGAEGQGLSEAAKALATGTVLIPMAAGIE
HHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEHHCCCH
SLNVAAAAAVCLFEQRRQRAARG
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]