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The map label for this gene is intD [H]

Identifier: 119898154

GI number: 119898154

Start: 2046178

End: 2047254

Strand: Direct

Name: intD [H]

Synonym: azo1863

Alternate gene names: 119898154

Gene position: 2046178-2047254 (Clockwise)

Preceding gene: 119898153

Following gene: 119898155

Centisome position: 46.76

GC content: 62.12

Gene sequence:

>1077_bases
ATGGCGACGATCACCAAACGGCAAGGCAAGCACGGCACGACCTACAAGGTGCAGATCCGCCTTAAGGGTTATCCCGCCGA
AACTGCTACTTTCGATCGCCTGAGCGACGCCCGCACCTGGGCTGCGCAGACTGAAACCGCCATCAAGGCCGGCAAGCACT
TCGGTGTAGCCAAGCGCCGTACCCTTCACGAACTCGCCGAGAAGTACGAACAGGCGGTAGCTGACTCTCTAAAGTCCTTC
GAGGCCCGCAGGGGACATCTGGCCTACTGGCGGCAGGCGTTCGGCTCATCTGCTCTTGCGGACGTCTCCCCTGCCCTCAT
TGCCGAGCATCGGGATCGCCTCACAAAGAGAACGACGGAACGGGGCACGGTATCCCTTGCTACCGTCAATCGGTACATCG
CCACCCTGTCCGCACTTTTCACTTTCGCTGTGAAGGAGCTGCAGTGGGTGGAGGCAAACCCCGTCGAGCGCGTGCGTAAG
TTCGGTGAGTCGCCCGGTCGAGTGCGCTACCTGTCTGACCAAGAGCGCGCGGCGTTACTCACGGCGTGTAGAGAGTCGCG
TAACCCGTACCTATATCCCGCGGTTGTGCTGGCGCTCTCGACAGGCGCACGGCAGGCGGAAATCACCACCCTTCGCTGGC
AACAGGTCGACTTCGCTCGCCGAACTATCGTCTTGCGGGAGGGAGAAACGAAAAACGGCGCTGGGCGCGTGCTTCCGCTG
ACCGGGGAAGCGCTAGACCTGCTGCGCGACCTCGCCAAGGTCCGCGACATCCGCGACGACAGGGTGTTTCCTGTGGCCTC
CACCACTCGCGCTTTCAACAGCATCAAGGGTGCGTGGGATGGTGCGGTAAAGCGAGCCGGGATCAGTGATTTCCGCTGGC
ACGATTTGCGGCATACGGCAGCGAGTTATCTGACGATGGCTGGCATCGGATCCATGGAGGTCGCCAAGGTCCTCGGCCAC
AAGACCCTGCAGATGACCGCCCGGTACAGCCACCTATCGCCCGAGCGCACCGTCGAGCTTGGCGACGTGCTCACCAAGCG
ACTCGGGCTCACCAGCAAGAAAGATTCCGCCGCCTAG

Upstream 100 bases:

>100_bases
CGGGTTTCTGAGGCACGAATTTGGCACAGCCCTGCCCCGGTTTTGATCGCGTCCAAACGTTGCGCTACTGTTCGGCCCAC
AGCATTTCGTGGGCAGCGAC

Downstream 100 bases:

>100_bases
TTGAACTAGGCACGCTCACGCCAACCTTTATTTGGGAGGTCCACAGTATGGCTAGAGGGAAAAATAGCGCGCTCTCGAAC
ATCGATGCCGATCGACCGGC

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MATITKRQGKHGTTYKVQIRLKGYPAETATFDRLSDARTWAAQTETAIKAGKHFGVAKRRTLHELAEKYEQAVADSLKSF
EARRGHLAYWRQAFGSSALADVSPALIAEHRDRLTKRTTERGTVSLATVNRYIATLSALFTFAVKELQWVEANPVERVRK
FGESPGRVRYLSDQERAALLTACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLREGETKNGAGRVLPL
TGEALDLLRDLAKVRDIRDDRVFPVASTTRAFNSIKGAWDGAVKRAGISDFRWHDLRHTAASYLTMAGIGSMEVAKVLGH
KTLQMTARYSHLSPERTVELGDVLTKRLGLTSKKDSAA

Sequences:

>Translated_358_residues
MATITKRQGKHGTTYKVQIRLKGYPAETATFDRLSDARTWAAQTETAIKAGKHFGVAKRRTLHELAEKYEQAVADSLKSF
EARRGHLAYWRQAFGSSALADVSPALIAEHRDRLTKRTTERGTVSLATVNRYIATLSALFTFAVKELQWVEANPVERVRK
FGESPGRVRYLSDQERAALLTACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLREGETKNGAGRVLPL
TGEALDLLRDLAKVRDIRDDRVFPVASTTRAFNSIKGAWDGAVKRAGISDFRWHDLRHTAASYLTMAGIGSMEVAKVLGH
KTLQMTARYSHLSPERTVELGDVLTKRLGLTSKKDSAA
>Mature_357_residues
ATITKRQGKHGTTYKVQIRLKGYPAETATFDRLSDARTWAAQTETAIKAGKHFGVAKRRTLHELAEKYEQAVADSLKSFE
ARRGHLAYWRQAFGSSALADVSPALIAEHRDRLTKRTTERGTVSLATVNRYIATLSALFTFAVKELQWVEANPVERVRKF
GESPGRVRYLSDQERAALLTACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLREGETKNGAGRVLPLT
GEALDLLRDLAKVRDIRDDRVFPVASTTRAFNSIKGAWDGAVKRAGISDFRWHDLRHTAASYLTMAGIGSMEVAKVLGHK
TLQMTARYSHLSPERTVELGDVLTKRLGLTSKKDSAA

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=311, Percent_Identity=28.6173633440514, Blast_Score=118, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39913; Mature: 39782

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATITKRQGKHGTTYKVQIRLKGYPAETATFDRLSDARTWAAQTETAIKAGKHFGVAKRR
CCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
TLHELAEKYEQAVADSLKSFEARRGHLAYWRQAFGSSALADVSPALIAEHRDRLTKRTTE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCC
RGTVSLATVNRYIATLSALFTFAVKELQWVEANPVERVRKFGESPGRVRYLSDQERAALL
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEECCHHHHHHH
TACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLREGETKNGAGRVLPL
HHHHHCCCCEEHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHEEEEECCCCCCCCCCEEEC
TGEALDLLRDLAKVRDIRDDRVFPVASTTRAFNSIKGAWDGAVKRAGISDFRWHDLRHTA
CHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
ASYLTMAGIGSMEVAKVLGHKTLQMTARYSHLSPERTVELGDVLTKRLGLTSKKDSAA
HHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ATITKRQGKHGTTYKVQIRLKGYPAETATFDRLSDARTWAAQTETAIKAGKHFGVAKRR
CCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
TLHELAEKYEQAVADSLKSFEARRGHLAYWRQAFGSSALADVSPALIAEHRDRLTKRTTE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCC
RGTVSLATVNRYIATLSALFTFAVKELQWVEANPVERVRKFGESPGRVRYLSDQERAALL
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEECCHHHHHHH
TACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLREGETKNGAGRVLPL
HHHHHCCCCEEHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHEEEEECCCCCCCCCCEEEC
TGEALDLLRDLAKVRDIRDDRVFPVASTTRAFNSIKGAWDGAVKRAGISDFRWHDLRHTA
CHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
ASYLTMAGIGSMEVAKVLGHKTLQMTARYSHLSPERTVELGDVLTKRLGLTSKKDSAA
HHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]