| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is yhdF [H]
Identifier: 119898023
GI number: 119898023
Start: 1900291
End: 1901157
Strand: Direct
Name: yhdF [H]
Synonym: azo1732
Alternate gene names: 119898023
Gene position: 1900291-1901157 (Clockwise)
Preceding gene: 119898022
Following gene: 119898025
Centisome position: 43.42
GC content: 68.51
Gene sequence:
>867_bases ATGAGCGACAAGGATTCCGGCCACCGCCTGCCGCCGCAGCACCAGGACGAGCAGCCGGGGCGCGAGAACGAGATGCGGCC GCAGCCCGAGGACCGCATGCACGGCTACCGCGGCAGCGACAAGCTGGCGGGCAAGGTGGCCATCATCACCGGCGGCGACA GCGGCATCGGCCGCGCGGTGGCGATCGCCTTCGCCAAGGAAGGCGCCGACGTGGCGGTGGCCTACCTCGAAGAGCACGAG GACGCCGAGCAGACCCGGCGCGAGGTCGAACTGCAGGGCAGGCGCTGCCTGCTGATGGCGGGCGACATCGGCAACGAGTC CTTCACCGCCAAGCTGGTGGAGCAGACGCTGAGCGCCTTCGGCCGGCTCGACATCGTGGTGAACAACGCCGCCGAGCAGC ACCCTCAGGAAAACTTCGAGGACATCAGCCGCGAACAGCTGGAGCGCACCTTCCGCACCAACCTGTTCTCGATGTTCGAC CTCTGCCGCCACGCGCTGCCGCACCTGCAGCAGGGCGCATGCATCATCAACACCACCTCGGTCACCGCCTACCGCGGCAG CGCGCACCTGATCGACTATTCCGCCACCAAGGGCGCCATCGTGTCCTTCACCCGCTCGCTGGCGCAGGCGCTGGCGGCCA AGCGCATCCGGGTGAACGCGGTGGCGCCGGGGCCGATCTGGACGCCGCTGATTCCCGCCACGTTCAAGGCCGAGGAGGTG GAAAAATTCGGCGCCAAGGAACCCCTCGGGCGCCCTGGCCAGCCCGACGAGGTGGCGCCGAGTTTCGTCTTTCTCGCCAG CCAGGATGCAAGCTACGTGACCGGCCAGGTGCTGCATCCCAACGGCGGCGAGATCGTCAACGGCTAG
Upstream 100 bases:
>100_bases GCGCTCGGCGCGCTGGCAGGTTTCGTCGCCCGCGGGCGGCATCGCTGAACGCGGCCGGGGCGCGCCCGGCCGGCGCGCCC CGCGGCGTGGGGAGACAGAC
Downstream 100 bases:
>100_bases CGCGGCGCGGCCACGGCGCCGCCTGCCCTGGGGGCGCACCGCACAGCAGCGCGGGCAGCACCACTCGTTCCACGCAGTGC CAGCCGCGATCATCGTGGGC
Product: short-chain dehydrogenase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MSDKDSGHRLPPQHQDEQPGRENEMRPQPEDRMHGYRGSDKLAGKVAIITGGDSGIGRAVAIAFAKEGADVAVAYLEEHE DAEQTRREVELQGRRCLLMAGDIGNESFTAKLVEQTLSAFGRLDIVVNNAAEQHPQENFEDISREQLERTFRTNLFSMFD LCRHALPHLQQGACIINTTSVTAYRGSAHLIDYSATKGAIVSFTRSLAQALAAKRIRVNAVAPGPIWTPLIPATFKAEEV EKFGAKEPLGRPGQPDEVAPSFVFLASQDASYVTGQVLHPNGGEIVNG
Sequences:
>Translated_288_residues MSDKDSGHRLPPQHQDEQPGRENEMRPQPEDRMHGYRGSDKLAGKVAIITGGDSGIGRAVAIAFAKEGADVAVAYLEEHE DAEQTRREVELQGRRCLLMAGDIGNESFTAKLVEQTLSAFGRLDIVVNNAAEQHPQENFEDISREQLERTFRTNLFSMFD LCRHALPHLQQGACIINTTSVTAYRGSAHLIDYSATKGAIVSFTRSLAQALAAKRIRVNAVAPGPIWTPLIPATFKAEEV EKFGAKEPLGRPGQPDEVAPSFVFLASQDASYVTGQVLHPNGGEIVNG >Mature_287_residues SDKDSGHRLPPQHQDEQPGRENEMRPQPEDRMHGYRGSDKLAGKVAIITGGDSGIGRAVAIAFAKEGADVAVAYLEEHED AEQTRREVELQGRRCLLMAGDIGNESFTAKLVEQTLSAFGRLDIVVNNAAEQHPQENFEDISREQLERTFRTNLFSMFDL CRHALPHLQQGACIINTTSVTAYRGSAHLIDYSATKGAIVSFTRSLAQALAAKRIRVNAVAPGPIWTPLIPATFKAEEVE KFGAKEPLGRPGQPDEVAPSFVFLASQDASYVTGQVLHPNGGEIVNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=35.2422907488987, Blast_Score=118, Evalue=7e-27, Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=34.0248962655602, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI10190704, Length=273, Percent_Identity=31.8681318681319, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=30.0395256916996, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=30.7086614173228, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI19923817, Length=270, Percent_Identity=30.7407407407407, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI5031737, Length=238, Percent_Identity=30.672268907563, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=30.3149606299213, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=30.3643724696356, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=30.2788844621514, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=27.34375, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI31542939, Length=209, Percent_Identity=30.622009569378, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=31.0880829015544, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=30.1587301587302, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI83715985, Length=254, Percent_Identity=28.3464566929134, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI310128830, Length=199, Percent_Identity=27.1356783919598, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI310115468, Length=199, Percent_Identity=27.1356783919598, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI210032110, Length=187, Percent_Identity=28.3422459893048, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI224922801, Length=180, Percent_Identity=30.5555555555556, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI7706318, Length=218, Percent_Identity=26.1467889908257, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI4503301, Length=255, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI126723191, Length=194, Percent_Identity=25.7731958762887, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1789378, Length=275, Percent_Identity=45.8181818181818, Blast_Score=247, Evalue=5e-67, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=33.7301587301587, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=33.6032388663968, Blast_Score=127, Evalue=8e-31, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=34.4262295081967, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=31.8181818181818, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=31.4741035856574, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=33.4677419354839, Blast_Score=114, Evalue=7e-27, Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=30.8300395256917, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=28.4, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=27.34375, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI2367365, Length=237, Percent_Identity=29.1139240506329, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=29.2307692307692, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787526, Length=265, Percent_Identity=24.5283018867925, Blast_Score=64, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=32.2448979591837, Blast_Score=124, Evalue=7e-29, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=32.8, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=33.7349397590361, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=35.7414448669202, Blast_Score=122, Evalue=3e-28, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=34.0996168582375, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=34.4827586206897, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=36.1216730038023, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=33.587786259542, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=34.0996168582375, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI72000259, Length=258, Percent_Identity=30.6201550387597, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17555706, Length=269, Percent_Identity=32.3420074349442, Blast_Score=113, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=34.3396226415094, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=31.1787072243346, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=32.183908045977, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI71994600, Length=247, Percent_Identity=31.9838056680162, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=31.4176245210728, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=30.2681992337165, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560332, Length=260, Percent_Identity=35, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=33.8403041825095, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=31.2252964426877, Blast_Score=105, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=31.8007662835249, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=29.1828793774319, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=30.3149606299213, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=31.0861423220974, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=30.9160305343511, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=29.296875, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17538182, Length=230, Percent_Identity=31.304347826087, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=28.4552845528455, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17561272, Length=253, Percent_Identity=30.0395256916996, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=30.4812834224599, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=27.1794871794872, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17567345, Length=196, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17508651, Length=246, Percent_Identity=27.2357723577236, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203115, Length=195, Percent_Identity=27.6923076923077, Blast_Score=69, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=252, Percent_Identity=26.1904761904762, Blast_Score=77, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=28.4, Blast_Score=76, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=216, Percent_Identity=26.3888888888889, Blast_Score=74, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=28.0612244897959, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=38.1526104417671, Blast_Score=134, Evalue=6e-32, Organism=Drosophila melanogaster, GI21357041, Length=245, Percent_Identity=35.1020408163265, Blast_Score=127, Evalue=1e-29, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32.8, Blast_Score=126, Evalue=2e-29, Organism=Drosophila melanogaster, GI28571526, Length=245, Percent_Identity=35.1020408163265, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=32.1285140562249, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=31.6205533596838, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24643142, Length=250, Percent_Identity=31.6, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI17737361, Length=229, Percent_Identity=31.8777292576419, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI24644337, Length=259, Percent_Identity=36.2934362934363, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24665243, Length=215, Percent_Identity=27.906976744186, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI221331218, Length=194, Percent_Identity=28.8659793814433, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI281364892, Length=176, Percent_Identity=27.8409090909091, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24665247, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI221331216, Length=198, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI18859837, Length=198, Percent_Identity=26.7676767676768, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31401; Mature: 31269
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDKDSGHRLPPQHQDEQPGRENEMRPQPEDRMHGYRGSDKLAGKVAIITGGDSGIGRAV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCCEE AIAFAKEGADVAVAYLEEHEDAEQTRREVELQGRRCLLMAGDIGNESFTAKLVEQTLSAF EEEECCCCCCEEEHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH GRLDIVVNNAAEQHPQENFEDISREQLERTFRTNLFSMFDLCRHALPHLQQGACIINTTS CCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECE VTAYRGSAHLIDYSATKGAIVSFTRSLAQALAAKRIRVNAVAPGPIWTPLIPATFKAEEV EEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCHHHH EKFGAKEPLGRPGQPDEVAPSFVFLASQDASYVTGQVLHPNGGEIVNG HHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCC >Mature Secondary Structure SDKDSGHRLPPQHQDEQPGRENEMRPQPEDRMHGYRGSDKLAGKVAIITGGDSGIGRAV CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCCCEE AIAFAKEGADVAVAYLEEHEDAEQTRREVELQGRRCLLMAGDIGNESFTAKLVEQTLSAF EEEECCCCCCEEEHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH GRLDIVVNNAAEQHPQENFEDISREQLERTFRTNLFSMFDLCRHALPHLQQGACIINTTS CCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECE VTAYRGSAHLIDYSATKGAIVSFTRSLAQALAAKRIRVNAVAPGPIWTPLIPATFKAEEV EEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCHHHH EKFGAKEPLGRPGQPDEVAPSFVFLASQDASYVTGQVLHPNGGEIVNG HHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]