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The map label for this gene is ycaN [H]

Identifier: 119897927

GI number: 119897927

Start: 1796728

End: 1797744

Strand: Reverse

Name: ycaN [H]

Synonym: azo1636

Alternate gene names: 119897927

Gene position: 1797744-1796728 (Counterclockwise)

Preceding gene: 119897943

Following gene: 119897920

Centisome position: 41.08

GC content: 69.03

Gene sequence:

>1017_bases
ATGGACAAGCTGAAGGCATTGCAGTACTTCATCGCCGCCGCGCAGGAAGGCAGCTTCTCCGGCGCGGCGCGCCGGCTCGA
CGTCAGCGTGCCGGCCATCGCCAAGCTGATCGGCGCGCTCGAACGCGAACTCGGGGCGAATCTGCTCGACCGCAGCACGC
AGGGTCTGCGGCTCACCGCCCGCGGCTCCGCGTATCTGGAAGCGTGCGCCCCGCTACTGGACGAGCTGGCGGATGCCGAC
CGTCTCGCGGCGGCGGCCGAGACCGACACCCCACGCCGCCTGGCGGTGGGAGCGCCCGCCCTCTTCACGCGTCTGCATTT
GATTCCCGCCCTCGCGCGCTTTCACGACCGCCACCCTCATGCACGCATCGAATTGCGCGCAATCGATCATCTCAAGGTCA
CCGAGGCGCAGGCTCAGGGGCTGGACGTACTCCTGATCCACGGCTGGCCAAGCACCGGCGAGATGATTCAGCGCCGCCTG
GCGCAGAGCCGGCTCATCGTGTGCGGCAGCCCGGCCTACTGGAAGCGCCACGGCCTTCCGCTGCACCCGCGCGAGCTGGC
TGCCCATCAGTGCCTGCTGGTGCGCTCGCCGGAAGGCGTGCTGCTCGACTTCTGGCGCCATCAGCGCGACGGCGAAACCG
AAGAGGTTGCAGTCAGCGGCTGGCTGACCAGTGAAAATCGGGACCATGTCCTGCAGGCCGTGCTCGACGGCCAGGGCATC
GGCCGTTTCGCCGATCTGGCGGTGTGGCCACACGTGAAGGAAGGCCGGCTCGAGCCGGTGCTGACGGATTGGGACAGCCG
CGACGCTCCGCCCTTCAGCGCGCTCTATCGGCCCACGGCGCGCCGCGATCCGCTGCTGCAGGCCTTCATCGCTTTTGCCG
AAGAGTTGTTCAGCCAGTTGGAGGCCGAATGCCGGCAGGCGATCGGCGCGCGCCCGGCCGCCACGCGGCCCGGCTGGTGC
GAGCAACGGCAGGGCCGGGCGTCAATGGCACGGACCAAACCGGTATCACATGGCTGA

Upstream 100 bases:

>100_bases
GTGTACCGAATCTAGCCGCCGGGCCTCGGGCACGAAACGCGCAGCAGACTAAAATCGCCTTTAACCGCCGGTTAAAGCGG
CCCCTTCCCGGAGCAAGTGC

Downstream 100 bases:

>100_bases
CGACACGCCGCACGCGTCACCAGCCTGCCGGCCTAAAGCGTGTTGCCCACCCGCCCGCAATGGGCGCGCACTGCGGCTTC
ATCCAGGTGGTAGTGGCAGA

Product: HTH-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MDKLKALQYFIAAAQEGSFSGAARRLDVSVPAIAKLIGALERELGANLLDRSTQGLRLTARGSAYLEACAPLLDELADAD
RLAAAAETDTPRRLAVGAPALFTRLHLIPALARFHDRHPHARIELRAIDHLKVTEAQAQGLDVLLIHGWPSTGEMIQRRL
AQSRLIVCGSPAYWKRHGLPLHPRELAAHQCLLVRSPEGVLLDFWRHQRDGETEEVAVSGWLTSENRDHVLQAVLDGQGI
GRFADLAVWPHVKEGRLEPVLTDWDSRDAPPFSALYRPTARRDPLLQAFIAFAEELFSQLEAECRQAIGARPAATRPGWC
EQRQGRASMARTKPVSHG

Sequences:

>Translated_338_residues
MDKLKALQYFIAAAQEGSFSGAARRLDVSVPAIAKLIGALERELGANLLDRSTQGLRLTARGSAYLEACAPLLDELADAD
RLAAAAETDTPRRLAVGAPALFTRLHLIPALARFHDRHPHARIELRAIDHLKVTEAQAQGLDVLLIHGWPSTGEMIQRRL
AQSRLIVCGSPAYWKRHGLPLHPRELAAHQCLLVRSPEGVLLDFWRHQRDGETEEVAVSGWLTSENRDHVLQAVLDGQGI
GRFADLAVWPHVKEGRLEPVLTDWDSRDAPPFSALYRPTARRDPLLQAFIAFAEELFSQLEAECRQAIGARPAATRPGWC
EQRQGRASMARTKPVSHG
>Mature_338_residues
MDKLKALQYFIAAAQEGSFSGAARRLDVSVPAIAKLIGALERELGANLLDRSTQGLRLTARGSAYLEACAPLLDELADAD
RLAAAAETDTPRRLAVGAPALFTRLHLIPALARFHDRHPHARIELRAIDHLKVTEAQAQGLDVLLIHGWPSTGEMIQRRL
AQSRLIVCGSPAYWKRHGLPLHPRELAAHQCLLVRSPEGVLLDFWRHQRDGETEEVAVSGWLTSENRDHVLQAVLDGQGI
GRFADLAVWPHVKEGRLEPVLTDWDSRDAPPFSALYRPTARRDPLLQAFIAFAEELFSQLEAECRQAIGARPAATRPGWC
EQRQGRASMARTKPVSHG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=31.0104529616725, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=29.4915254237288, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI145693193, Length=265, Percent_Identity=30.188679245283, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789639, Length=310, Percent_Identity=26.4516129032258, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789440, Length=305, Percent_Identity=26.5573770491803, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=28.3216783216783, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081978, Length=271, Percent_Identity=27.6752767527675, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789173, Length=263, Percent_Identity=27.7566539923954, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=123, Percent_Identity=29.2682926829268, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI157672245, Length=129, Percent_Identity=32.5581395348837, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37360; Mature: 37360

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLKALQYFIAAAQEGSFSGAARRLDVSVPAIAKLIGALERELGANLLDRSTQGLRLTA
CCHHHHHHHHHHHHCCCCCCCHHHEEECCHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEE
RGSAYLEACAPLLDELADADRLAAAAETDTPRRLAVGAPALFTRLHLIPALARFHDRHPH
CCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCC
ARIELRAIDHLKVTEAQAQGLDVLLIHGWPSTGEMIQRRLAQSRLIVCGSPAYWKRHGLP
CEEEEEECCCEEEEHHHHCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCHHHHCCCC
LHPRELAAHQCLLVRSPEGVLLDFWRHQRDGETEEVAVSGWLTSENRDHVLQAVLDGQGI
CCHHHHHHHHEEEEECCCCHHHHHHHCCCCCCCHHEEEEEEECCCCHHHHHHHHHCCCCC
GRFADLAVWPHVKEGRLEPVLTDWDSRDAPPFSALYRPTARRDPLLQAFIAFAEELFSQL
CHHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
EAECRQAIGARPAATRPGWCEQRQGRASMARTKPVSHG
HHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHCCCCCCC
>Mature Secondary Structure
MDKLKALQYFIAAAQEGSFSGAARRLDVSVPAIAKLIGALERELGANLLDRSTQGLRLTA
CCHHHHHHHHHHHHCCCCCCCHHHEEECCHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEE
RGSAYLEACAPLLDELADADRLAAAAETDTPRRLAVGAPALFTRLHLIPALARFHDRHPH
CCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCC
ARIELRAIDHLKVTEAQAQGLDVLLIHGWPSTGEMIQRRLAQSRLIVCGSPAYWKRHGLP
CEEEEEECCCEEEEHHHHCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCHHHHCCCC
LHPRELAAHQCLLVRSPEGVLLDFWRHQRDGETEEVAVSGWLTSENRDHVLQAVLDGQGI
CCHHHHHHHHEEEEECCCCHHHHHHHCCCCCCCHHEEEEEEECCCCHHHHHHHHHCCCCC
GRFADLAVWPHVKEGRLEPVLTDWDSRDAPPFSALYRPTARRDPLLQAFIAFAEELFSQL
CHHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
EAECRQAIGARPAATRPGWCEQRQGRASMARTKPVSHG
HHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]