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The map label for this gene is cph1 [H]

Identifier: 119897878

GI number: 119897878

Start: 1744963

End: 1746744

Strand: Reverse

Name: cph1 [H]

Synonym: azo1587

Alternate gene names: 119897878

Gene position: 1746744-1744963 (Counterclockwise)

Preceding gene: 119897882

Following gene: 119897877

Centisome position: 39.92

GC content: 68.69

Gene sequence:

>1782_bases
ATGCCGCCGCTGTCCGGACACCCCTCTTCGTCACCGCGTACCGCCCGCATTCCCGTGCTCCGTCTGGTCGCACTGTACTG
TGCGGCGGCGGTCGCATGGAGTCTGGCAATCACCCTGCTGCCGGCGCTGCTGGGTCTGCCGCCGGAAGCGACGGATGCAC
TGCGCTTCTGGGGCCTGGTGGCGTTGACGGCCGCCGCACTGCCGCTGGCCGCGCGTACTACGCTGCTCGGGGGCGCGGCC
CCGGAGGGCGAACCGGCGGAATCCCTGCAGCGCCGGCTTGCCGAGGTGGCAACCCGCTACAGCGTGCTGGTGGACAGTTC
CCCAATGGGGATATTCCATTTCGACACCACGCTGCGCCTCACCCAGTTCAATACCCGTTTCGCCGAAATACTGAAGTCGC
CGCCGGAGTCGCTGCAGGGGCTGACGCTCGATGCCCTGCGCGACCAGCGTGTGCTGCCCGCCATCCGCGCCGCCCTCGAA
GGCCAGGCCGCCCAGTACGAAGGCGACTACGTCGCCACCCACTCGAGCCGCCAGATCCACGTCAGCCTGCGGACCGCCCC
GCTGCGGGACGCGGCCGGCACGATCGTCGGCGGCATCGGCATCGTCGAGGACACCACCGCGCGCCACGAGGCCGAATCCA
TGCTGCGCGAAAGCGAGGCGCGCTACGCGCTGGCGATGCGCGGCACCAACGAAGGCCTGTGGGACTGGAACCCGGTCACG
CACGGCCTCTTCCTCTCCAGTCGCCTGCTCACCGCGCTCGGCGTATCGAGCGAACACCTCAGCACCAACAGTGACGAGTG
GCTGCGCCGCATCCATGAAGAGGACCGCCCGGCCTTCCAGCGCTGCCTGACCGCCCATCTGAAAGGCCAGACTCCGCATT
TCGAATGCGAGTACCGCGTGCTCGACGCCGAAGGCAGCTACCGCTGGGTGCTGGCGCGTGGCCTCGCCCAGCGCGACTGG
AAGGGACGCGCCTACCGCATGGTGGGGTCGATCGGGGACATCACCGAACGCAAACGCGCCGAAACCGCGCTGAAGAACAT
GAACCGCGAGCTGGAGTCGCGCGTCGAGGAACGCACTGCCCAGCTCGCCGCCGCGGTGAAGGAACTGGAAGCGTTCAGCT
ACTCGGTCTCCCACGACTTGCGCGCGCCGCTGCGGGTCATCGACGGCTACAGCGCACTGCTCGAAAGCGAATACGCCGAG
CAGCTCGACAGCGACGCCCGCGGCTTGCTGGGACGGATGCGGCTGGCCGTGCAGCGGATGGGCGAGCTGATCGACGATCT
CCTCGACCTCGCCCGCATGTCGCGCCAGCCCTTGCAGCGTGGGCGGGTCGATCTCTCGGCGCTCGCGGCGAAGATCGTCG
CGGAACTGCGGGAAAACGATCCCGAACGCACGGTGGAGGTCGACATCACGCCGGGCATCGTCGTGCAGGCGGACCCGGGG
TTGCTGGAGATCGCGCTCCACAACCTGCTTTCGAACGCGTGGAAATTCACCTCCAGGGAGCCCGCCGCACGCATCAGCCT
ATATCCGGACCGCAGCCAACCCGGGGTGATCTGCGTCGAGGACAACGGCGCCGGCTTCGACATGCGCTACGCGAACAAGC
TCTTCGGCGCGTTCCAGCGCCTGCATACCGACCGCGAATTTCCCGGCACCGGCGTCGGCCTGGCCACGGTGGCGCGTGTC
GTCCAGCGGCACGGCGGCCACATCGAGGCCCATGGGGCGCCCGGCAAAGGCGCCTGTTTCCGCTTCAGCCTCGCGCCGCG
CGACACCGCCACCAACGACTGA

Upstream 100 bases:

>100_bases
GGGCATTGCTCCTTTGCTGAGGACAGAAGTGTAAAGGAGCTGATCACTTTTCCGTTCGACACTTGCCATTAGCTATTACC
TAAGTACTATAGAAGAGATC

Downstream 100 bases:

>100_bases
ACCGACGTCCCGCGGCCGGTCTAATCCTGCAATGCAGCAGCAGGAGCAGGATCGTGCGCCCTTACCGTCTCATCCCCCTG
GCCCTCGCCGCGCTGGCGGC

Product: putative two-component system sensor protein

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 593; Mature: 592

Protein sequence:

>593_residues
MPPLSGHPSSSPRTARIPVLRLVALYCAAAVAWSLAITLLPALLGLPPEATDALRFWGLVALTAAALPLAARTTLLGGAA
PEGEPAESLQRRLAEVATRYSVLVDSSPMGIFHFDTTLRLTQFNTRFAEILKSPPESLQGLTLDALRDQRVLPAIRAALE
GQAAQYEGDYVATHSSRQIHVSLRTAPLRDAAGTIVGGIGIVEDTTARHEAESMLRESEARYALAMRGTNEGLWDWNPVT
HGLFLSSRLLTALGVSSEHLSTNSDEWLRRIHEEDRPAFQRCLTAHLKGQTPHFECEYRVLDAEGSYRWVLARGLAQRDW
KGRAYRMVGSIGDITERKRAETALKNMNRELESRVEERTAQLAAAVKELEAFSYSVSHDLRAPLRVIDGYSALLESEYAE
QLDSDARGLLGRMRLAVQRMGELIDDLLDLARMSRQPLQRGRVDLSALAAKIVAELRENDPERTVEVDITPGIVVQADPG
LLEIALHNLLSNAWKFTSREPAARISLYPDRSQPGVICVEDNGAGFDMRYANKLFGAFQRLHTDREFPGTGVGLATVARV
VQRHGGHIEAHGAPGKGACFRFSLAPRDTATND

Sequences:

>Translated_593_residues
MPPLSGHPSSSPRTARIPVLRLVALYCAAAVAWSLAITLLPALLGLPPEATDALRFWGLVALTAAALPLAARTTLLGGAA
PEGEPAESLQRRLAEVATRYSVLVDSSPMGIFHFDTTLRLTQFNTRFAEILKSPPESLQGLTLDALRDQRVLPAIRAALE
GQAAQYEGDYVATHSSRQIHVSLRTAPLRDAAGTIVGGIGIVEDTTARHEAESMLRESEARYALAMRGTNEGLWDWNPVT
HGLFLSSRLLTALGVSSEHLSTNSDEWLRRIHEEDRPAFQRCLTAHLKGQTPHFECEYRVLDAEGSYRWVLARGLAQRDW
KGRAYRMVGSIGDITERKRAETALKNMNRELESRVEERTAQLAAAVKELEAFSYSVSHDLRAPLRVIDGYSALLESEYAE
QLDSDARGLLGRMRLAVQRMGELIDDLLDLARMSRQPLQRGRVDLSALAAKIVAELRENDPERTVEVDITPGIVVQADPG
LLEIALHNLLSNAWKFTSREPAARISLYPDRSQPGVICVEDNGAGFDMRYANKLFGAFQRLHTDREFPGTGVGLATVARV
VQRHGGHIEAHGAPGKGACFRFSLAPRDTATND
>Mature_592_residues
PPLSGHPSSSPRTARIPVLRLVALYCAAAVAWSLAITLLPALLGLPPEATDALRFWGLVALTAAALPLAARTTLLGGAAP
EGEPAESLQRRLAEVATRYSVLVDSSPMGIFHFDTTLRLTQFNTRFAEILKSPPESLQGLTLDALRDQRVLPAIRAALEG
QAAQYEGDYVATHSSRQIHVSLRTAPLRDAAGTIVGGIGIVEDTTARHEAESMLRESEARYALAMRGTNEGLWDWNPVTH
GLFLSSRLLTALGVSSEHLSTNSDEWLRRIHEEDRPAFQRCLTAHLKGQTPHFECEYRVLDAEGSYRWVLARGLAQRDWK
GRAYRMVGSIGDITERKRAETALKNMNRELESRVEERTAQLAAAVKELEAFSYSVSHDLRAPLRVIDGYSALLESEYAEQ
LDSDARGLLGRMRLAVQRMGELIDDLLDLARMSRQPLQRGRVDLSALAAKIVAELRENDPERTVEVDITPGIVVQADPGL
LEIALHNLLSNAWKFTSREPAARISLYPDRSQPGVICVEDNGAGFDMRYANKLFGAFQRLHTDREFPGTGVGLATVARVV
QRHGGHIEAHGAPGKGACFRFSLAPRDTATND

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1786912, Length=242, Percent_Identity=30.1652892561983, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI48994928, Length=282, Percent_Identity=26.241134751773, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786600, Length=266, Percent_Identity=30.0751879699248, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788549, Length=215, Percent_Identity=26.9767441860465, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1789808, Length=230, Percent_Identity=27.8260869565217, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1790346, Length=212, Percent_Identity=29.2452830188679, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1789149, Length=251, Percent_Identity=25.8964143426295, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790436, Length=215, Percent_Identity=30.6976744186047, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI145693157, Length=257, Percent_Identity=25.6809338521401, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1790861, Length=237, Percent_Identity=27.8481012658228, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790551, Length=223, Percent_Identity=26.9058295964126, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 65133; Mature: 65002

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPLSGHPSSSPRTARIPVLRLVALYCAAAVAWSLAITLLPALLGLPPEATDALRFWGLV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ALTAAALPLAARTTLLGGAAPEGEPAESLQRRLAEVATRYSVLVDSSPMGIFHFDTTLRL
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCEEEEECCEEEE
TQFNTRFAEILKSPPESLQGLTLDALRDQRVLPAIRAALEGQAAQYEGDYVATHSSRQIH
EHHHHHHHHHHCCCHHHHCCCCHHHHHCCHHHHHHHHHHCCCCHHCCCCEEEECCCCEEE
VSLRTAPLRDAAGTIVGGIGIVEDTTARHEAESMLRESEARYALAMRGTNEGLWDWNPVT
EEEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHH
HGLFLSSRLLTALGVSSEHLSTNSDEWLRRIHEEDRPAFQRCLTAHLKGQTPHFECEYRV
HHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEE
LDAEGSYRWVLARGLAQRDWKGRAYRMVGSIGDITERKRAETALKNMNRELESRVEERTA
EECCCCEEEHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLAAAVKELEAFSYSVSHDLRAPLRVIDGYSALLESEYAEQLDSDARGLLGRMRLAVQRM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
GELIDDLLDLARMSRQPLQRGRVDLSALAAKIVAELRENDPERTVEVDITPGIVVQADPG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCC
LLEIALHNLLSNAWKFTSREPAARISLYPDRSQPGVICVEDNGAGFDMRYANKLFGAFQR
HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
LHTDREFPGTGVGLATVARVVQRHGGHIEAHGAPGKGACFRFSLAPRDTATND
HHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCC
>Mature Secondary Structure 
PPLSGHPSSSPRTARIPVLRLVALYCAAAVAWSLAITLLPALLGLPPEATDALRFWGLV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ALTAAALPLAARTTLLGGAAPEGEPAESLQRRLAEVATRYSVLVDSSPMGIFHFDTTLRL
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCEEEEECCEEEE
TQFNTRFAEILKSPPESLQGLTLDALRDQRVLPAIRAALEGQAAQYEGDYVATHSSRQIH
EHHHHHHHHHHCCCHHHHCCCCHHHHHCCHHHHHHHHHHCCCCHHCCCCEEEECCCCEEE
VSLRTAPLRDAAGTIVGGIGIVEDTTARHEAESMLRESEARYALAMRGTNEGLWDWNPVT
EEEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHH
HGLFLSSRLLTALGVSSEHLSTNSDEWLRRIHEEDRPAFQRCLTAHLKGQTPHFECEYRV
HHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEE
LDAEGSYRWVLARGLAQRDWKGRAYRMVGSIGDITERKRAETALKNMNRELESRVEERTA
EECCCCEEEHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLAAAVKELEAFSYSVSHDLRAPLRVIDGYSALLESEYAEQLDSDARGLLGRMRLAVQRM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
GELIDDLLDLARMSRQPLQRGRVDLSALAAKIVAELRENDPERTVEVDITPGIVVQADPG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCC
LLEIALHNLLSNAWKFTSREPAARISLYPDRSQPGVICVEDNGAGFDMRYANKLFGAFQR
HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
LHTDREFPGTGVGLATVARVVQRHGGHIEAHGAPGKGACFRFSLAPRDTATND
HHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]