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The map label for this gene is smpB

Identifier: 119897867

GI number: 119897867

Start: 1734888

End: 1735334

Strand: Reverse

Name: smpB

Synonym: azo1576

Alternate gene names: 119897867

Gene position: 1735334-1734888 (Counterclockwise)

Preceding gene: 119897870

Following gene: 119897866

Centisome position: 39.66

GC content: 61.3

Gene sequence:

>447_bases
ATGAGCATCATCGATAATCGCAAGGCTTATCACGACTATTTCATCGAGGAAAAGTACGAGGCCGGCCTCGTCCTCGAAGG
ATGGGAGGTGAAGGCGATCCGCGCCGGCCGCGCCAATATCAAGGAGGCCTACATCATCGTGCGCGGTGAGGAAATCTTCA
TCCTCGGCATGCACATCACTCCGCTCGCCAGTGCCTCCACCCACATTCGCACCGACCCCACCCGCACCCGCAAGCTGCTC
CTTCATGGCGCCGAGATCGCGCGCCTCATCGGCAAGGTCGAACGCGCAGGATTCACCCTGGTGCCGCTGGACCTCCACTA
TGCCAAGGGCCGCGTGAAGGCGGAGATCGGGCTGGCGAAAGGCAAGAAGCAGTACGACAAGCGCGAAGACGAGAAGAAGC
GCGACTGGGAGCGCGAGAAGCAGCGCCTGATGCGGGTGAAGGCGTAA

Upstream 100 bases:

>100_bases
GAACGCGCTGCCGAACTGATAACATGCGCGATTCTACCGCATGCCCGGCACCCGTCCGCCGCGCCGAACCAATACACGCC
GAGGACACCCAGGTTCTTCC

Downstream 100 bases:

>100_bases
GTCGCCGCCGCGAGGCCGATACGTCTCCTGACACTCCGGGCAGTGTGGATTTCATCTCCGCGGCATAAGCTGCAAGTCCG
AGTCTTGCTCCCCACACGCC

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MSIIDNRKAYHDYFIEEKYEAGLVLEGWEVKAIRAGRANIKEAYIIVRGEEIFILGMHITPLASASTHIRTDPTRTRKLL
LHGAEIARLIGKVERAGFTLVPLDLHYAKGRVKAEIGLAKGKKQYDKREDEKKRDWEREKQRLMRVKA

Sequences:

>Translated_148_residues
MSIIDNRKAYHDYFIEEKYEAGLVLEGWEVKAIRAGRANIKEAYIIVRGEEIFILGMHITPLASASTHIRTDPTRTRKLL
LHGAEIARLIGKVERAGFTLVPLDLHYAKGRVKAEIGLAKGKKQYDKREDEKKRDWEREKQRLMRVKA
>Mature_147_residues
SIIDNRKAYHDYFIEEKYEAGLVLEGWEVKAIRAGRANIKEAYIIVRGEEIFILGMHITPLASASTHIRTDPTRTRKLLL
HGAEIARLIGKVERAGFTLVPLDLHYAKGRVKAEIGLAKGKKQYDKREDEKKRDWEREKQRLMRVKA

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=144, Percent_Identity=53.4722222222222, Blast_Score=170, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_AZOSB (A1K5T8)

Other databases:

- EMBL:   AM406670
- RefSeq:   YP_933080.1
- ProteinModelPortal:   A1K5T8
- SMR:   A1K5T8
- STRING:   A1K5T8
- GeneID:   4609388
- GenomeReviews:   AM406670_GR
- KEGG:   azo:azo1576
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- PhylomeDB:   A1K5T8
- ProtClustDB:   PRK05422
- BioCyc:   ASP62928:AZO1576-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17113; Mature: 16982

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIIDNRKAYHDYFIEEKYEAGLVLEGWEVKAIRAGRANIKEAYIIVRGEEIFILGMHIT
CCCCCCCHHHHHHHHHCCCCCCEEEECCEEEEEECCCCCCCEEEEEEECCEEEEEEEEEC
PLASASTHIRTDPTRTRKLLLHGAEIARLIGKVERAGFTLVPLDLHYAKGRVKAEIGLAK
CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCEEEEEEECCC
GKKQYDKREDEKKRDWEREKQRLMRVKA
CCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SIIDNRKAYHDYFIEEKYEAGLVLEGWEVKAIRAGRANIKEAYIIVRGEEIFILGMHIT
CCCCCCHHHHHHHHHCCCCCCEEEECCEEEEEECCCCCCCEEEEEEECCEEEEEEEEEC
PLASASTHIRTDPTRTRKLLLHGAEIARLIGKVERAGFTLVPLDLHYAKGRVKAEIGLAK
CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCEEEEEEECCC
GKKQYDKREDEKKRDWEREKQRLMRVKA
CCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA