Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 119897826

GI number: 119897826

Start: 1681615

End: 1684014

Strand: Direct

Name: yciR [C]

Synonym: azo1535

Alternate gene names: 119897826

Gene position: 1681615-1684014 (Clockwise)

Preceding gene: 119897825

Following gene: 119897827

Centisome position: 38.43

GC content: 70.33

Gene sequence:

>2400_bases
ATGACCGGGCATGTCACATCCAACCGCATGCGGCGCACGCGATCCGATGCGGGAGTACAGGGGCCGGCCCGTGCGCTGAC
CGTGTTGCGCTCGGTAAACGCGCTGATTTCCGAGACGAGCGACGAGGCCCTGCTGCTGCGCGAGGTCTGCCGCATCGTTG
CCGCACCCAGCGCCTACTGCTGCGTCTGGGTCGCGTTTCCACAGGCGGACGGCCAGCACATGGAGGTGGTCGCATCGTGG
GGCGCCACCGCCGGGGAACTGTGGGATCGGCCGCTCACACCTGATGGCGGCGGCGCCGAAGAGCAAGGCCTGACCGGCCG
CTTGCGGCTGGGCTGGTCGTGGCAGGTGCCGCCTGTCCCCGGCGAGCAGGGCGGTGGCCTGGCGGTGCTCCCGCTGGGGG
CCGGTTCCGCGCTGATTGGCGGCCTGATCGTGGGCACAGCGGACGGCGGGGGTTTCGCCACCGAGGAACTCGCGCTGTTG
CACGAGGCAGCGAAGAGCCTGGCCTACGGGATCGCCGCGCTGCGCTCGGCGAGCCAGCGCGCGGCGGCCGAAGCTGAACT
GCGCCGCGTAGACCGCGCGCGGCGCACGCTCAGCGCGGCCAATCGCGCGCTCGTACGCATCGCGGACGAGCAGGCACTGC
TCGACGCGATCTGCCGCGTGATCGTGGAAGAAGGCGGCTACCGCTACGCCTGGGTGGGCTACGCCCGCCACGATGAGGCA
CGCGGCATCGATGTCATGGCCGAGGTCGGGGTGGACCGGCCGCATCTCGAAGACCTCCGCCTGACCTGGGCCGATACCGA
GCGTGGCCGCAGCGCAACCGGCACCGCGATCCGCAGCGGACGCCCGAGCATCGGACGCAACATCCTCAGCGATCCCGACC
TGGCACCCTGGCGTGCCGAGGCGATACGGCGCGGCTACGCGGCGGTCAGCGCCTTCCCGCTCTTCGTCGGCGGCGAAGTC
ATCGGCAACCTCAGCATCGCCGCGGCGGAGGCCGACGCCTTCGATGCCGGCGAGGCTGAACTGCTGGGCGAGTTGGCGGC
CGATCTTGCCTTCGGCATCGAAACCCTGCGCATGCGCCGTCGCAGCGAGGCCGCGGAGGCCACGATCAAGCGCATGGCCG
AGCAGGACACGCTGACCGGACTGCCCAACCGCTGGCGCCTGCGCCTGCGCCTGAGCGAGGCGATCGTGGCGGCGAAGGCG
GCGCACCGGCCGTTCGCGCTGCTGATGACAGGCATCGACCGCTTCCAGGACGTCAATGAAACCCTCGGCTACCAGCAGGG
CGACGCGCTGCTGTGCGAGGTGGCGGCGCGCTTGTCGGGCCCGCTGGCCGATCCCGCCAACATCGCGCGGGTGGGCGAGG
CGGAGTTCGCCATCCTGCTGCCCAGCGCCGACGCGAGCGCGGCCGCGGTGGCGGCGCAGCGGATCATCGCCGACATGCTG
GCGCCGGTTGCCAGCGGCGACATCATGCTCGACGCCGGCTGCAGCGTGGGGATCGCGGTCTTCCCCGGCCACGGCGCGGA
GCCCGACACCCTGATCCGCCGCGCAAATGTCGCAATGCACCAGGCCCGCCAGCAGGGGCGCGGCTTCGCGCTCTACACCG
GCGGCCGCGACCGCGAATGCGCGCGCCGGCTGGCGCTCATCGGCGATCTGCATCGCGCGATCGACAACAACGAGTTGCGC
CTTTACTGCCAGCCCAAGATGCGCTTCGCCAGCGGCGAGATCTGCGGCGTGGAGGCGCTGGTGCGCTGGCAGCATCCGCA
GCTGGGCCTGATCCAGCCCGACGAGTTCATCGGCCTGGCCGAGCACAGCGGCCTGATCGGGCCGCTGACCGACTGGGTGA
TGCAGGCGGCTTTCCGCCAGGGATATGTGTGGCGCGAAGCCGGGTTGCACCTGCCGCTGGCGGTGAATCTCTCCGCACGC
GACCTGCGCGATCCGCGTCTGCTCGAACGGGTGCGCAACCTGCTGGCCACCTGGGGCGGCGAGCCGGGCAGCGCGCAGTT
CGAGCTGACCGAGAGCGCCTTGATGCACGACCCCCAAGGCAGCCTCGATTGCCTGTCGCGCCTGCGCGAACTCGGCGTGG
AACTGTTCATCGACGATTTCGGCACCGGCTATTCCTCGCTCGCCTATCTGCAGAAGCTCCCGGTCGATGCGATCAAGATC
GACAAGTCCTTCGTGCACGACATGCTCTCCAACCCGGATTCGGCGGTGATCGTGCGCTCGACGATCGATCTCGCCCACGA
TCTGGAACTGGAAGTGGTGGCCGAAGGCGTGGAGGACCGTGCCGGATGGGAGCACTTGGCCGCGCGCGGTTGCGATGTGT
GCCAGGGCTACGTCGTGGGCCAGCCGGTGCCGGCGGAGGCGTACACCGAGCGTCTGGTGCAGGGCGGGGGGATGCCTTAA

Upstream 100 bases:

>100_bases
TTTGATTTGACGGAATTTTCGCTCAACCTTTTCGCGTCCGCCCCCGTCCAAGGCCGTATACCTGTCCTTCCACCCGCGGT
GGACGGCAAAGGAGGCGCAA

Downstream 100 bases:

>100_bases
GAATTTTTTAGCCTTGCGAACGGCATTTGTTAGCAATTCCGTTGTGGTAGCGGGCGCACACTCGCGGCGTTCCGGAAAAC
AGCCGGAAACGACCAAAACC

Product: putative signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 799; Mature: 798

Protein sequence:

>799_residues
MTGHVTSNRMRRTRSDAGVQGPARALTVLRSVNALISETSDEALLLREVCRIVAAPSAYCCVWVAFPQADGQHMEVVASW
GATAGELWDRPLTPDGGGAEEQGLTGRLRLGWSWQVPPVPGEQGGGLAVLPLGAGSALIGGLIVGTADGGGFATEELALL
HEAAKSLAYGIAALRSASQRAAAEAELRRVDRARRTLSAANRALVRIADEQALLDAICRVIVEEGGYRYAWVGYARHDEA
RGIDVMAEVGVDRPHLEDLRLTWADTERGRSATGTAIRSGRPSIGRNILSDPDLAPWRAEAIRRGYAAVSAFPLFVGGEV
IGNLSIAAAEADAFDAGEAELLGELAADLAFGIETLRMRRRSEAAEATIKRMAEQDTLTGLPNRWRLRLRLSEAIVAAKA
AHRPFALLMTGIDRFQDVNETLGYQQGDALLCEVAARLSGPLADPANIARVGEAEFAILLPSADASAAAVAAQRIIADML
APVASGDIMLDAGCSVGIAVFPGHGAEPDTLIRRANVAMHQARQQGRGFALYTGGRDRECARRLALIGDLHRAIDNNELR
LYCQPKMRFASGEICGVEALVRWQHPQLGLIQPDEFIGLAEHSGLIGPLTDWVMQAAFRQGYVWREAGLHLPLAVNLSAR
DLRDPRLLERVRNLLATWGGEPGSAQFELTESALMHDPQGSLDCLSRLRELGVELFIDDFGTGYSSLAYLQKLPVDAIKI
DKSFVHDMLSNPDSAVIVRSTIDLAHDLELEVVAEGVEDRAGWEHLAARGCDVCQGYVVGQPVPAEAYTERLVQGGGMP

Sequences:

>Translated_799_residues
MTGHVTSNRMRRTRSDAGVQGPARALTVLRSVNALISETSDEALLLREVCRIVAAPSAYCCVWVAFPQADGQHMEVVASW
GATAGELWDRPLTPDGGGAEEQGLTGRLRLGWSWQVPPVPGEQGGGLAVLPLGAGSALIGGLIVGTADGGGFATEELALL
HEAAKSLAYGIAALRSASQRAAAEAELRRVDRARRTLSAANRALVRIADEQALLDAICRVIVEEGGYRYAWVGYARHDEA
RGIDVMAEVGVDRPHLEDLRLTWADTERGRSATGTAIRSGRPSIGRNILSDPDLAPWRAEAIRRGYAAVSAFPLFVGGEV
IGNLSIAAAEADAFDAGEAELLGELAADLAFGIETLRMRRRSEAAEATIKRMAEQDTLTGLPNRWRLRLRLSEAIVAAKA
AHRPFALLMTGIDRFQDVNETLGYQQGDALLCEVAARLSGPLADPANIARVGEAEFAILLPSADASAAAVAAQRIIADML
APVASGDIMLDAGCSVGIAVFPGHGAEPDTLIRRANVAMHQARQQGRGFALYTGGRDRECARRLALIGDLHRAIDNNELR
LYCQPKMRFASGEICGVEALVRWQHPQLGLIQPDEFIGLAEHSGLIGPLTDWVMQAAFRQGYVWREAGLHLPLAVNLSAR
DLRDPRLLERVRNLLATWGGEPGSAQFELTESALMHDPQGSLDCLSRLRELGVELFIDDFGTGYSSLAYLQKLPVDAIKI
DKSFVHDMLSNPDSAVIVRSTIDLAHDLELEVVAEGVEDRAGWEHLAARGCDVCQGYVVGQPVPAEAYTERLVQGGGMP
>Mature_798_residues
TGHVTSNRMRRTRSDAGVQGPARALTVLRSVNALISETSDEALLLREVCRIVAAPSAYCCVWVAFPQADGQHMEVVASWG
ATAGELWDRPLTPDGGGAEEQGLTGRLRLGWSWQVPPVPGEQGGGLAVLPLGAGSALIGGLIVGTADGGGFATEELALLH
EAAKSLAYGIAALRSASQRAAAEAELRRVDRARRTLSAANRALVRIADEQALLDAICRVIVEEGGYRYAWVGYARHDEAR
GIDVMAEVGVDRPHLEDLRLTWADTERGRSATGTAIRSGRPSIGRNILSDPDLAPWRAEAIRRGYAAVSAFPLFVGGEVI
GNLSIAAAEADAFDAGEAELLGELAADLAFGIETLRMRRRSEAAEATIKRMAEQDTLTGLPNRWRLRLRLSEAIVAAKAA
HRPFALLMTGIDRFQDVNETLGYQQGDALLCEVAARLSGPLADPANIARVGEAEFAILLPSADASAAAVAAQRIIADMLA
PVASGDIMLDAGCSVGIAVFPGHGAEPDTLIRRANVAMHQARQQGRGFALYTGGRDRECARRLALIGDLHRAIDNNELRL
YCQPKMRFASGEICGVEALVRWQHPQLGLIQPDEFIGLAEHSGLIGPLTDWVMQAAFRQGYVWREAGLHLPLAVNLSARD
LRDPRLLERVRNLLATWGGEPGSAQFELTESALMHDPQGSLDCLSRLRELGVELFIDDFGTGYSSLAYLQKLPVDAIKID
KSFVHDMLSNPDSAVIVRSTIDLAHDLELEVVAEGVEDRAGWEHLAARGCDVCQGYVVGQPVPAEAYTERLVQGGGMP

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=425, Percent_Identity=37.1764705882353, Blast_Score=279, Evalue=5e-76,
Organism=Escherichia coli, GI87081921, Length=455, Percent_Identity=34.0659340659341, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI226510982, Length=418, Percent_Identity=30.622009569378, Blast_Score=191, Evalue=2e-49,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=36.4372469635627, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=36.4016736401674, Blast_Score=149, Evalue=7e-37,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=36.7088607594937, Blast_Score=142, Evalue=7e-35,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=35.2226720647773, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081980, Length=265, Percent_Identity=33.9622641509434, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI1788849, Length=265, Percent_Identity=34.3396226415094, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=30.4, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI1787055, Length=265, Percent_Identity=30.9433962264151, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87082096, Length=254, Percent_Identity=31.1023622047244, Blast_Score=106, Evalue=8e-24,
Organism=Escherichia coli, GI1788381, Length=193, Percent_Identity=28.4974093264249, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=31.4465408805031, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081977, Length=211, Percent_Identity=23.2227488151659, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=28.6585365853659, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=27.710843373494, Blast_Score=63, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 85799; Mature: 85668

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGHVTSNRMRRTRSDAGVQGPARALTVLRSVNALISETSDEALLLREVCRIVAAPSAYC
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEE
CVWVAFPQADGQHMEVVASWGATAGELWDRPLTPDGGGAEEQGLTGRLRLGWSWQVPPVP
EEEEEECCCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEECEEECCCCCC
GEQGGGLAVLPLGAGSALIGGLIVGTADGGGFATEELALLHEAAKSLAYGIAALRSASQR
CCCCCCEEEEECCCCHHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAEAELRRVDRARRTLSAANRALVRIADEQALLDAICRVIVEEGGYRYAWVGYARHDEA
HHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
RGIDVMAEVGVDRPHLEDLRLTWADTERGRSATGTAIRSGRPSIGRNILSDPDLAPWRAE
CCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCHHHCCCCHHCCCCCCCCCCCCHHHH
AIRRGYAAVSAFPLFVGGEVIGNLSIAAAEADAFDAGEAELLGELAADLAFGIETLRMRR
HHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RSEAAEATIKRMAEQDTLTGLPNRWRLRLRLSEAIVAAKAAHRPFALLMTGIDRFQDVNE
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TLGYQQGDALLCEVAARLSGPLADPANIARVGEAEFAILLPSADASAAAVAAQRIIADML
HCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH
APVASGDIMLDAGCSVGIAVFPGHGAEPDTLIRRANVAMHQARQQGRGFALYTGGRDREC
HHHCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
ARRLALIGDLHRAIDNNELRLYCQPKMRFASGEICGVEALVRWQHPQLGLIQPDEFIGLA
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHEECCCCCCCCCCHHHCCHH
EHSGLIGPLTDWVMQAAFRQGYVWREAGLHLPLAVNLSARDLRDPRLLERVRNLLATWGG
HCCCCCHHHHHHHHHHHHHCCCEEHHCCCCCEEEECCCHHHCCCHHHHHHHHHHHHHCCC
EPGSAQFELTESALMHDPQGSLDCLSRLRELGVELFIDDFGTGYSSLAYLQKLPVDAIKI
CCCCCEEEEHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCHHHHH
DKSFVHDMLSNPDSAVIVRSTIDLAHDLELEVVAEGVEDRAGWEHLAARGCDVCQGYVVG
HHHHHHHHHCCCCCEEEEEEEHHHHHCCCHHHHHCCHHHHCCHHHHHHCCCHHHCCEECC
QPVPAEAYTERLVQGGGMP
CCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TGHVTSNRMRRTRSDAGVQGPARALTVLRSVNALISETSDEALLLREVCRIVAAPSAYC
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEE
CVWVAFPQADGQHMEVVASWGATAGELWDRPLTPDGGGAEEQGLTGRLRLGWSWQVPPVP
EEEEEECCCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEECEEECCCCCC
GEQGGGLAVLPLGAGSALIGGLIVGTADGGGFATEELALLHEAAKSLAYGIAALRSASQR
CCCCCCEEEEECCCCHHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAEAELRRVDRARRTLSAANRALVRIADEQALLDAICRVIVEEGGYRYAWVGYARHDEA
HHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
RGIDVMAEVGVDRPHLEDLRLTWADTERGRSATGTAIRSGRPSIGRNILSDPDLAPWRAE
CCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCHHHCCCCHHCCCCCCCCCCCCHHHH
AIRRGYAAVSAFPLFVGGEVIGNLSIAAAEADAFDAGEAELLGELAADLAFGIETLRMRR
HHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RSEAAEATIKRMAEQDTLTGLPNRWRLRLRLSEAIVAAKAAHRPFALLMTGIDRFQDVNE
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TLGYQQGDALLCEVAARLSGPLADPANIARVGEAEFAILLPSADASAAAVAAQRIIADML
HCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH
APVASGDIMLDAGCSVGIAVFPGHGAEPDTLIRRANVAMHQARQQGRGFALYTGGRDREC
HHHCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
ARRLALIGDLHRAIDNNELRLYCQPKMRFASGEICGVEALVRWQHPQLGLIQPDEFIGLA
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHEECCCCCCCCCCHHHCCHH
EHSGLIGPLTDWVMQAAFRQGYVWREAGLHLPLAVNLSARDLRDPRLLERVRNLLATWGG
HCCCCCHHHHHHHHHHHHHCCCEEHHCCCCCEEEECCCHHHCCCHHHHHHHHHHHHHCCC
EPGSAQFELTESALMHDPQGSLDCLSRLRELGVELFIDDFGTGYSSLAYLQKLPVDAIKI
CCCCCEEEEHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCHHHHH
DKSFVHDMLSNPDSAVIVRSTIDLAHDLELEVVAEGVEDRAGWEHLAARGCDVCQGYVVG
HHHHHHHHHCCCCCEEEEEEEHHHHHCCCHHHHHCCHHHHCCHHHHHHCCCHHHCCEECC
QPVPAEAYTERLVQGGGMP
CCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]