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The map label for this gene is ymdB [C]

Identifier: 119897780

GI number: 119897780

Start: 1626384

End: 1626902

Strand: Reverse

Name: ymdB [C]

Synonym: azo1489

Alternate gene names: 119897780

Gene position: 1626902-1626384 (Counterclockwise)

Preceding gene: 119897781

Following gene: 119897778

Centisome position: 37.18

GC content: 69.94

Gene sequence:

>519_bases
ATGCCCGTGCATATCGACACCCTGCGCGCCGACATCACCACGCTGCCGGTCGACGCGATCGTCAACGCGGCCAACCGCTC
GCTGCTCGGCGGTGGCGGCGTGGACGGCGCGATCCACCGTGCGGCCGGTTTCGAACTGCTCGAAGCCTGCCGCAAGCTCG
GCGGCTGCGAACCCGGCGACGCGAAGATCACGCCCGGCTTCCTGCTGAAGGCGCGCTACGTGGTCCACACCGTCGGCCCG
ATCTGGCACGGCGGCACGCGCGGCGAAGCCGAGGTGCTGGCCAGTTGCTACTGGCGCTGCCTGGAGGTGGCGGCCGAACA
CGGCGTGCGCTCGATCGCGTTTCCGTGCATCAGCACCGGGGTGTATGGCTATCCGCCTGAGCTGGCCGCGCAGGTGGCGG
TGGGCACCGTGCGCTACGCGCTATCGGGCGAGCATCCGTTCGAGCAGGTGCTGTTCTGCTGTTTCTCGCCGGCCGACCTG
CGCCTGTACGAGCATCTGCTGGCCGACCCAGCGGGCTGA

Upstream 100 bases:

>100_bases
CGCCGCCGCCATCCCGCTTGCATGCGCGGGTGGCGATCGCCCTACAATCACGCCACTCCCCAACACCTGAACCCCGCCGT
TTCCGCCCGCTCCAACTGTC

Downstream 100 bases:

>100_bases
CCCCCCCCCCCTCAATCGCCGTCGCCCGCCCCTGCCCCGCCCAGCACGCCGGCTGCGCGCAGCCGCGCCTTGTAGGCCTT
CATGACCGGGCGCGAGATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MPVHIDTLRADITTLPVDAIVNAANRSLLGGGGVDGAIHRAAGFELLEACRKLGGCEPGDAKITPGFLLKARYVVHTVGP
IWHGGTRGEAEVLASCYWRCLEVAAEHGVRSIAFPCISTGVYGYPPELAAQVAVGTVRYALSGEHPFEQVLFCCFSPADL
RLYEHLLADPAG

Sequences:

>Translated_172_residues
MPVHIDTLRADITTLPVDAIVNAANRSLLGGGGVDGAIHRAAGFELLEACRKLGGCEPGDAKITPGFLLKARYVVHTVGP
IWHGGTRGEAEVLASCYWRCLEVAAEHGVRSIAFPCISTGVYGYPPELAAQVAVGTVRYALSGEHPFEQVLFCCFSPADL
RLYEHLLADPAG
>Mature_171_residues
PVHIDTLRADITTLPVDAIVNAANRSLLGGGGVDGAIHRAAGFELLEACRKLGGCEPGDAKITPGFLLKARYVVHTVGPI
WHGGTRGEAEVLASCYWRCLEVAAEHGVRSIAFPCISTGVYGYPPELAAQVAVGTVRYALSGEHPFEQVLFCCFSPADLR
LYEHLLADPAG

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=163, Percent_Identity=53.3742331288344, Blast_Score=172, Evalue=9e-44,
Organism=Homo sapiens, GI13569840, Length=166, Percent_Identity=52.4096385542169, Blast_Score=162, Evalue=1e-40,
Organism=Homo sapiens, GI207450721, Length=164, Percent_Identity=40.2439024390244, Blast_Score=103, Evalue=7e-23,
Organism=Homo sapiens, GI8923143, Length=164, Percent_Identity=40.2439024390244, Blast_Score=103, Evalue=8e-23,
Organism=Homo sapiens, GI20336746, Length=171, Percent_Identity=28.6549707602339, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI226371718, Length=150, Percent_Identity=30, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371716, Length=150, Percent_Identity=30, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371714, Length=150, Percent_Identity=30, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371712, Length=150, Percent_Identity=30, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371710, Length=150, Percent_Identity=30, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI226371706, Length=150, Percent_Identity=30, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI154813199, Length=135, Percent_Identity=34.8148148148148, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI93141018, Length=174, Percent_Identity=26.4367816091954, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI93141020, Length=174, Percent_Identity=26.4367816091954, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI4758496, Length=174, Percent_Identity=26.4367816091954, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1787283, Length=171, Percent_Identity=50.8771929824561, Blast_Score=157, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI17538214, Length=164, Percent_Identity=46.9512195121951, Blast_Score=138, Evalue=1e-33,
Organism=Drosophila melanogaster, GI24586353, Length=159, Percent_Identity=33.9622641509434, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18256; Mature: 18125

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVHIDTLRADITTLPVDAIVNAANRSLLGGGGVDGAIHRAAGFELLEACRKLGGCEPGD
CCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
AKITPGFLLKARYVVHTVGPIWHGGTRGEAEVLASCYWRCLEVAAEHGVRSIAFPCISTG
CCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
VYGYPPELAAQVAVGTVRYALSGEHPFEQVLFCCFSPADLRLYEHLLADPAG
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PVHIDTLRADITTLPVDAIVNAANRSLLGGGGVDGAIHRAAGFELLEACRKLGGCEPGD
CCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
AKITPGFLLKARYVVHTVGPIWHGGTRGEAEVLASCYWRCLEVAAEHGVRSIAFPCISTG
CCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
VYGYPPELAAQVAVGTVRYALSGEHPFEQVLFCCFSPADLRLYEHLLADPAG
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]