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The map label for this gene is flhC [H]

Identifier: 119897738

GI number: 119897738

Start: 1577079

End: 1577633

Strand: Direct

Name: flhC [H]

Synonym: azo1447

Alternate gene names: 119897738

Gene position: 1577079-1577633 (Clockwise)

Preceding gene: 119897737

Following gene: 119897739

Centisome position: 36.04

GC content: 64.86

Gene sequence:

>555_bases
ATGAAAAATAAGCGCATCATTGACGAGGCGGAAGACATCCGCCGCGCAGTGGAAATGGTGCAGCTCGGTGCGCGCATGCA
GATGCTGGAGGTGGAAACCCGCCTCAGCCGCGAAAAGCTGCTGAAGATCTACAAGGAGGTGCGCGGCGTGTCGCCCCCGA
AGGGGATGCTGCCGTTCTCCACCGACTGGTTCATGACCTGGCAGCCGAATGTCCATTCGTCGCTGTTCATGGCCTTTCAC
CGCTTCTTCGCCGGTGCCGCGGGCGTGCAGGGGCTGGACGCGATCATCAAGTCCTACCACCTCTACCTCGACCACATCGA
GGCGGAGCAGATGGAGCCGGTGCTGAGCCTCACCCGCGCGTGGACGCTGGTGCGCTTCTTCGATGCCGACCTGCTGCAAC
TGGCGCCCTGCACCTGCTGCGGCGGTCACTACGTGGTGCATGCCTACGACCCCACCGCCAGCTTCGTCTGCGGGCTGTGC
AACATGCCCTCGCGCGCCGGCAAGACCAAGCGCGCCGCCGTGCGCAAGTCGTCCGTCCGCGCCGTCAGCGCCTGA

Upstream 100 bases:

>100_bases
CTGATGGCCGGCGAGGGGCGCGACCCGGCCACCTCCAGCCTGCATGCGGCAATCATCGCCGCGGGCAAGGCTGTGCAGGC
TTCGGCCCAGGAGTAAGAGC

Downstream 100 bases:

>100_bases
TTTCCGCCCCCATCCTCACGGGCCGCCTGCGTTAGCAGGCGGCCCGTGTCTTTTTGCACGGCCGGCGTTCAAGTTTGGCG
GATGCGGGACGATACAATTC

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MKNKRIIDEAEDIRRAVEMVQLGARMQMLEVETRLSREKLLKIYKEVRGVSPPKGMLPFSTDWFMTWQPNVHSSLFMAFH
RFFAGAAGVQGLDAIIKSYHLYLDHIEAEQMEPVLSLTRAWTLVRFFDADLLQLAPCTCCGGHYVVHAYDPTASFVCGLC
NMPSRAGKTKRAAVRKSSVRAVSA

Sequences:

>Translated_184_residues
MKNKRIIDEAEDIRRAVEMVQLGARMQMLEVETRLSREKLLKIYKEVRGVSPPKGMLPFSTDWFMTWQPNVHSSLFMAFH
RFFAGAAGVQGLDAIIKSYHLYLDHIEAEQMEPVLSLTRAWTLVRFFDADLLQLAPCTCCGGHYVVHAYDPTASFVCGLC
NMPSRAGKTKRAAVRKSSVRAVSA
>Mature_184_residues
MKNKRIIDEAEDIRRAVEMVQLGARMQMLEVETRLSREKLLKIYKEVRGVSPPKGMLPFSTDWFMTWQPNVHSSLFMAFH
RFFAGAAGVQGLDAIIKSYHLYLDHIEAEQMEPVLSLTRAWTLVRFFDADLLQLAPCTCCGGHYVVHAYDPTASFVCGLC
NMPSRAGKTKRAAVRKSSVRAVSA

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=179, Percent_Identity=52.5139664804469, Blast_Score=214, Evalue=3e-57,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 20783; Mature: 20783

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKRIIDEAEDIRRAVEMVQLGARMQMLEVETRLSREKLLKIYKEVRGVSPPKGMLPFS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWQPNVHSSLFMAFHRFFAGAAGVQGLDAIIKSYHLYLDHIEAEQMEPVLSLTRA
CCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WTLVRFFDADLLQLAPCTCCGGHYVVHAYDPTASFVCGLCNMPSRAGKTKRAAVRKSSVR
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
AVSA
HCCC
>Mature Secondary Structure
MKNKRIIDEAEDIRRAVEMVQLGARMQMLEVETRLSREKLLKIYKEVRGVSPPKGMLPFS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWQPNVHSSLFMAFHRFFAGAAGVQGLDAIIKSYHLYLDHIEAEQMEPVLSLTRA
CCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WTLVRFFDADLLQLAPCTCCGGHYVVHAYDPTASFVCGLCNMPSRAGKTKRAAVRKSSVR
HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
AVSA
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]