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The map label for this gene is yciR [C]

Identifier: 119897736

GI number: 119897736

Start: 1574860

End: 1576590

Strand: Direct

Name: yciR [C]

Synonym: azo1445

Alternate gene names: 119897736

Gene position: 1574860-1576590 (Clockwise)

Preceding gene: 119897735

Following gene: 119897737

Centisome position: 35.99

GC content: 68.98

Gene sequence:

>1731_bases
ATGAGCGCCGCGGTGGAGCACCGCGTGCTGGGGCGGCCGGCGGGGCCGGTGCGGTTGCTGATCGTCGACGATTCCGAGGA
CGACGCCTTTCTCGTCTGTGCGGAACTCACACGGCGCGGCATGGCGGTGCATCACCGGCGCGTCGATTGCGATTTCGACA
TGGCTGCGGCCCTCGCGGCGGAGCCCTGGGACGTGGTCCTGTCCGACCACAACATGCCGGGCTTCAGTTCGCTCGCGGCG
CTCGACGTGCTCAAGAGCAGCGGGCTCGACCTTCCCTTCATCATCCACTCCGGCGAAATCTCCGACCGCCAGGCCGTTTC
CGCGATGTACGAAGGGGTCGACGACTTCATCGCGAAGGGCGACTACGACCGCCTGCTGCCGGTGATCGAGCGCGAGCTGC
GCGGCCTGCATGCGCGCCGCGCGGTGCGCCAGGCCGACGAACGCATCCGCGAACTGGTCAATTTCGATGTCCTGTCGGCG
CTGCCCAACCACAACCTGTTCTGCACCAAGGTCGGTGACTGGATCGCCGATGCCGGCGCCCAGGCTGCGGGCGCGGTGCT
GGTGGTCGATGTCGACCGCTTCATGCGCATCAACGCCAGCTTCGGCTACGACACCGGCAACGTCATCCTGCGCCAGCTCG
GCGAGCGCCTCGCCGCGGGGCTGGCTGCCGACGTGATGCTGGCCCGCCTCGGCAGCGACCGCTTCGGCGTCTTCCTGCCC
GGCGTGGTGGAGCGCGAGCAGGCCGAGATCGCCGCCCGCTGGCTGCTGCGCGCGTTCGAGCAGCCGTTCATGAAGAACGA
CATCGAACTCTTCCTGACCGCGAGTGTGGGCATCGCGATGGTCGGGGGCGACGGCGCCGACGTGTTCGAGCTGCTGATGA
ACGCCGAAGCCGCGGTGGCGCGCGTGAAGTGCCAGGGCGGCAACGGCGTGCGCTGTTACGACCGGGCGATGAACGCCGCC
TCGGCCGAACGGCTGACGCTGGAGGCGGAGCTGCGCCACGCGGTCGAACGCGGCGAACTGCGCCTGTTCTACCAGCCGAT
CGTCGATCCCGATGGCACCGTGCGCGCCGCCGAGGCCCTGGTGCGCTGGCAGCATCCCGAGCAGGGCCTGCTGGCGCCGG
ACCGCTTCATCCCGCTGGCGGACGAAACCGGCCTGATCACCGAGATCGGCGCCTGGGTGCTGACCGAGGCCTGCTACCAG
GGGCGCTGCTGGCACGACGCCGGCCACGAGCGCTTTCGGGTTTCGGTCAACGTGTCGGCGGTGCAGTTCGGCCAGCCGCG
GCTGCTCGAAACGGTGCGCGAGGCGCTGCGCGGCAGCGGCTTCCCGCCCGCCTGCCTCACGCTGGAAATCACCGAGAGTT
CGCTGATGAGCGACGTCGAATCCGCGGCCGGCATGCTGCGTTCGCTGAAGAACATGGGCGTGCGGATTGCGGTGGACGAC
TTCGGCACCGGCTATTCGTCGCTGTCCTACCTGCGGCGGCTGCCGATCGACACCGTCAAGATCGACAAGTCTTTCGTGCG
CGACGTCAGCAACAACGGCGAAGACGCCGCCATCGTGCGCGCCATCATCGCGCTCGCCCACAGTCTGGGCCTGGGTACGG
TGGCGGAGGGTGTTGAAACCGCCGAGCAGGAGGCCACGCTGCGCCGAGAAGGCTGTGACAGCTTCCAGGGCTACCGCTAC
GGACGGCCGGTGCCCGCCGAAGTGTTCGTGATGGGGACGGTGCCGGGGTGA

Upstream 100 bases:

>100_bases
ACGCGCTGATGAAGCGCGCCGACCAGGGCGCTTACCTGGCCAAGCAGCGCGGCCGCAATTGCGTCGCCTCGGTGCAGGGC
GGCGCCGCGGGAGCCCAGCG

Downstream 100 bases:

>100_bases
TGCCAACGAGATATCCGGTGCCTGCCGCCGCGTTTCGGTGCATTGCGAGTGTTGCGCAACTGCGACATGTCCACGCGGCC
ACTCAGGGTATTCGTGCTTG

Product: EAL/GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 576; Mature: 575

Protein sequence:

>576_residues
MSAAVEHRVLGRPAGPVRLLIVDDSEDDAFLVCAELTRRGMAVHHRRVDCDFDMAAALAAEPWDVVLSDHNMPGFSSLAA
LDVLKSSGLDLPFIIHSGEISDRQAVSAMYEGVDDFIAKGDYDRLLPVIERELRGLHARRAVRQADERIRELVNFDVLSA
LPNHNLFCTKVGDWIADAGAQAAGAVLVVDVDRFMRINASFGYDTGNVILRQLGERLAAGLAADVMLARLGSDRFGVFLP
GVVEREQAEIAARWLLRAFEQPFMKNDIELFLTASVGIAMVGGDGADVFELLMNAEAAVARVKCQGGNGVRCYDRAMNAA
SAERLTLEAELRHAVERGELRLFYQPIVDPDGTVRAAEALVRWQHPEQGLLAPDRFIPLADETGLITEIGAWVLTEACYQ
GRCWHDAGHERFRVSVNVSAVQFGQPRLLETVREALRGSGFPPACLTLEITESSLMSDVESAAGMLRSLKNMGVRIAVDD
FGTGYSSLSYLRRLPIDTVKIDKSFVRDVSNNGEDAAIVRAIIALAHSLGLGTVAEGVETAEQEATLRREGCDSFQGYRY
GRPVPAEVFVMGTVPG

Sequences:

>Translated_576_residues
MSAAVEHRVLGRPAGPVRLLIVDDSEDDAFLVCAELTRRGMAVHHRRVDCDFDMAAALAAEPWDVVLSDHNMPGFSSLAA
LDVLKSSGLDLPFIIHSGEISDRQAVSAMYEGVDDFIAKGDYDRLLPVIERELRGLHARRAVRQADERIRELVNFDVLSA
LPNHNLFCTKVGDWIADAGAQAAGAVLVVDVDRFMRINASFGYDTGNVILRQLGERLAAGLAADVMLARLGSDRFGVFLP
GVVEREQAEIAARWLLRAFEQPFMKNDIELFLTASVGIAMVGGDGADVFELLMNAEAAVARVKCQGGNGVRCYDRAMNAA
SAERLTLEAELRHAVERGELRLFYQPIVDPDGTVRAAEALVRWQHPEQGLLAPDRFIPLADETGLITEIGAWVLTEACYQ
GRCWHDAGHERFRVSVNVSAVQFGQPRLLETVREALRGSGFPPACLTLEITESSLMSDVESAAGMLRSLKNMGVRIAVDD
FGTGYSSLSYLRRLPIDTVKIDKSFVRDVSNNGEDAAIVRAIIALAHSLGLGTVAEGVETAEQEATLRREGCDSFQGYRY
GRPVPAEVFVMGTVPG
>Mature_575_residues
SAAVEHRVLGRPAGPVRLLIVDDSEDDAFLVCAELTRRGMAVHHRRVDCDFDMAAALAAEPWDVVLSDHNMPGFSSLAAL
DVLKSSGLDLPFIIHSGEISDRQAVSAMYEGVDDFIAKGDYDRLLPVIERELRGLHARRAVRQADERIRELVNFDVLSAL
PNHNLFCTKVGDWIADAGAQAAGAVLVVDVDRFMRINASFGYDTGNVILRQLGERLAAGLAADVMLARLGSDRFGVFLPG
VVEREQAEIAARWLLRAFEQPFMKNDIELFLTASVGIAMVGGDGADVFELLMNAEAAVARVKCQGGNGVRCYDRAMNAAS
AERLTLEAELRHAVERGELRLFYQPIVDPDGTVRAAEALVRWQHPEQGLLAPDRFIPLADETGLITEIGAWVLTEACYQG
RCWHDAGHERFRVSVNVSAVQFGQPRLLETVREALRGSGFPPACLTLEITESSLMSDVESAAGMLRSLKNMGVRIAVDDF
GTGYSSLSYLRRLPIDTVKIDKSFVRDVSNNGEDAAIVRAIIALAHSLGLGTVAEGVETAEQEATLRREGCDSFQGYRYG
RPVPAEVFVMGTVPG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=37.1495327102804, Blast_Score=278, Evalue=1e-75,
Organism=Escherichia coli, GI87081921, Length=427, Percent_Identity=36.5339578454333, Blast_Score=246, Evalue=3e-66,
Organism=Escherichia coli, GI226510982, Length=439, Percent_Identity=31.4350797266515, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=36.4372469635627, Blast_Score=163, Evalue=3e-41,
Organism=Escherichia coli, GI1787055, Length=373, Percent_Identity=29.7587131367292, Blast_Score=159, Evalue=6e-40,
Organism=Escherichia coli, GI87081845, Length=252, Percent_Identity=37.3015873015873, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=36.2549800796813, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1786507, Length=257, Percent_Identity=33.4630350194552, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI87082096, Length=252, Percent_Identity=34.5238095238095, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=35.2697095435685, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=34.156378600823, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=32.3886639676113, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1789650, Length=450, Percent_Identity=20.6666666666667, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788381, Length=396, Percent_Identity=23.989898989899, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=29.3333333333333, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI145693134, Length=193, Percent_Identity=30.0518134715026, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 62822; Mature: 62691

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAVEHRVLGRPAGPVRLLIVDDSEDDAFLVCAELTRRGMAVHHRRVDCDFDMAAALAA
CCCCHHHHHHCCCCCCEEEEEEECCCCCEEEEEHHHHHCCHHHHHEECCCCHHHHHHHHC
EPWDVVLSDHNMPGFSSLAALDVLKSSGLDLPFIIHSGEISDRQAVSAMYEGVDDFIAKG
CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCHHHHHHCC
DYDRLLPVIERELRGLHARRAVRQADERIRELVNFDVLSALPNHNLFCTKVGDWIADAGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCC
QAAGAVLVVDVDRFMRINASFGYDTGNVILRQLGERLAAGLAADVMLARLGSDRFGVFLP
CCCCEEEEEECHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
GVVEREQAEIAARWLLRAFEQPFMKNDIELFLTASVGIAMVGGDGADVFELLMNAEAAVA
CHHHHHHHHHHHHHHHHHHHCCHHCCCEEEEEEECCCEEEECCCCHHHHHHHHCCHHHEE
RVKCQGGNGVRCYDRAMNAASAERLTLEAELRHAVERGELRLFYQPIVDPDGTVRAAEAL
EEEECCCCCCCHHHHHCCCCCHHHEEHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH
VRWQHPEQGLLAPDRFIPLADETGLITEIGAWVLTEACYQGRCWHDAGHERFRVSVNVSA
HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEE
VQFGQPRLLETVREALRGSGFPPACLTLEITESSLMSDVESAAGMLRSLKNMGVRIAVDD
EECCCCHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
FGTGYSSLSYLRRLPIDTVKIDKSFVRDVSNNGEDAAIVRAIIALAHSLGLGTVAEGVET
CCCCHHHHHHHHHCCCCCEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
AEQEATLRREGCDSFQGYRYGRPVPAEVFVMGTVPG
HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCC
>Mature Secondary Structure 
SAAVEHRVLGRPAGPVRLLIVDDSEDDAFLVCAELTRRGMAVHHRRVDCDFDMAAALAA
CCCHHHHHHCCCCCCEEEEEEECCCCCEEEEEHHHHHCCHHHHHEECCCCHHHHHHHHC
EPWDVVLSDHNMPGFSSLAALDVLKSSGLDLPFIIHSGEISDRQAVSAMYEGVDDFIAKG
CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCHHHHHHCC
DYDRLLPVIERELRGLHARRAVRQADERIRELVNFDVLSALPNHNLFCTKVGDWIADAGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCC
QAAGAVLVVDVDRFMRINASFGYDTGNVILRQLGERLAAGLAADVMLARLGSDRFGVFLP
CCCCEEEEEECHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
GVVEREQAEIAARWLLRAFEQPFMKNDIELFLTASVGIAMVGGDGADVFELLMNAEAAVA
CHHHHHHHHHHHHHHHHHHHCCHHCCCEEEEEEECCCEEEECCCCHHHHHHHHCCHHHEE
RVKCQGGNGVRCYDRAMNAASAERLTLEAELRHAVERGELRLFYQPIVDPDGTVRAAEAL
EEEECCCCCCCHHHHHCCCCCHHHEEHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH
VRWQHPEQGLLAPDRFIPLADETGLITEIGAWVLTEACYQGRCWHDAGHERFRVSVNVSA
HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEE
VQFGQPRLLETVREALRGSGFPPACLTLEITESSLMSDVESAAGMLRSLKNMGVRIAVDD
EECCCCHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
FGTGYSSLSYLRRLPIDTVKIDKSFVRDVSNNGEDAAIVRAIIALAHSLGLGTVAEGVET
CCCCHHHHHHHHHCCCCCEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
AEQEATLRREGCDSFQGYRYGRPVPAEVFVMGTVPG
HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]