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The map label for this gene is rarA [H]

Identifier: 119897658

GI number: 119897658

Start: 1488217

End: 1489554

Strand: Direct

Name: rarA [H]

Synonym: azo1367

Alternate gene names: 119897658

Gene position: 1488217-1489554 (Clockwise)

Preceding gene: 119897657

Following gene: 119897660

Centisome position: 34.01

GC content: 67.94

Gene sequence:

>1338_bases
ATGGCCGATCTGTTCGATTCGGTTGAACCGCAACGGGTGCCGCTGGCGGAGCGGATGCGCCCGGGCACCCTCGACGAAGT
TGCCGGGCAGGCGCACCTGCTCGGCCCGGGCAAGCCTTTGCGGCTCGCCTTTGCGTCGGGCAAACCGCACTCGATGATCC
TGTGGGGGCCGCCCGGTGTGGGCAAGACCACGCTGGCGCGGTTGATGGCGAAAGGCTTTGATGCCGAGTTCGTTGCGCTG
TCGGCGGTGTTTTCGGGCGTGAAGGACATCCGCGAGGCAATCGTGCAGGCGCAGGCGGCGAAGGCGCGGGGCCGCCACAC
CATCCTGTTCGTCGATGAAGTGCATCGGTTCAACAAGGCCCAGCAGGACGCCTTTCTGCCCTATGTCGAACAGGGCCTGG
TCACCTTTATCGGCGCGACCACCGAGAACCCCTCGTTCGAGGTCAATTCGGCGCTGCTGTCCCGCGCTGCGGTGTATGTG
CTGGAGCCGCTCGACACCGAGGCCATGCAAGGTCTGTTCGAGCGCGCACGCAGCCTCGCCTGTCCAGACCTCGTGTTCGA
GGAGGCGGCGCGCGAACGGATGATCGGCTTCGCCGACGGCGACGCTCGCCGCCTGATGAACCTGATCGAGCAGATCCAGG
TGGCGGCGGAAACGGCCGGCGTGGCGCCGGTCACCGCGGACTTCGTCGACGAGGCGCTGTCACGCGACCTGCGCCGCTTC
GACAAGGGCGGCGAGGCCTTCTACGACCAGATCTCCGCCCTGCACAAGTCCGTGCGCGGCTCCAATCCGGATGCGGCGCT
GTACTGGCTGTGCCGCATGCTCGACGGCGGCGCCGACGCCCACTACCTCGGGCGCCGGCTGGTGCGCATGGCGGTGGAAG
ACATCGGGCTGGCCGACCCACGTGCGCTCGAAATCGCGCTCAACGCGTGCGAAACCTACGAACGCCTGGGCTCACCGGAA
GGGGAACTGGCGCTGGCCGAAGCGACCGTGTTCCTGGCCTGCGCGGCGAAATCGAACGCGGTGTACAAGGCCTACAACGC
CGCGCGCCAGTTCATCGCCAAGGATGGCTCCCGGCCGGTGCCGCTGCATCTGCGCAATGCCCCGACCCGGCTGATGAAGG
AACTCGGCTACGGCCAGACCTACCGCTACGCGCACGACGAACCGGACGCCTATGCAGCGGGCGAAAGCTATCTGCCGGAA
GGCATGGCGCCTCCCGGCTGGTACCAGCCCACGCCGCGCGGGCTTGAAGCCCGCATCGCGGACAAACTCGCGCATCTGCG
CGAACTCGACCGCCAGGCGGGCGCCCGTGAGGGTACGGCGAAGGGGGAACGGGGGTGA

Upstream 100 bases:

>100_bases
TCGATCCGGCGCGCTTCCGCTTCGTGCCGCCCGCCGGTGCCGATGTCATCGGCGACGACGTCGCGCCGGCGCGCGCGCCG
CGGCGCTGACCGGTTCAGCA

Downstream 100 bases:

>100_bases
AGGACGGCCGGGCTGCGGGTCGCCCGGCCCCCCGCGGATCAGTGCGGGAGTGGATGGTCTTCCATGAACCGCGCGCACAG
CGACTTGGCGCGTTCGGCTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 444

Protein sequence:

>445_residues
MADLFDSVEPQRVPLAERMRPGTLDEVAGQAHLLGPGKPLRLAFASGKPHSMILWGPPGVGKTTLARLMAKGFDAEFVAL
SAVFSGVKDIREAIVQAQAAKARGRHTILFVDEVHRFNKAQQDAFLPYVEQGLVTFIGATTENPSFEVNSALLSRAAVYV
LEPLDTEAMQGLFERARSLACPDLVFEEAARERMIGFADGDARRLMNLIEQIQVAAETAGVAPVTADFVDEALSRDLRRF
DKGGEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGADAHYLGRRLVRMAVEDIGLADPRALEIALNACETYERLGSPE
GELALAEATVFLACAAKSNAVYKAYNAARQFIAKDGSRPVPLHLRNAPTRLMKELGYGQTYRYAHDEPDAYAAGESYLPE
GMAPPGWYQPTPRGLEARIADKLAHLRELDRQAGAREGTAKGERG

Sequences:

>Translated_445_residues
MADLFDSVEPQRVPLAERMRPGTLDEVAGQAHLLGPGKPLRLAFASGKPHSMILWGPPGVGKTTLARLMAKGFDAEFVAL
SAVFSGVKDIREAIVQAQAAKARGRHTILFVDEVHRFNKAQQDAFLPYVEQGLVTFIGATTENPSFEVNSALLSRAAVYV
LEPLDTEAMQGLFERARSLACPDLVFEEAARERMIGFADGDARRLMNLIEQIQVAAETAGVAPVTADFVDEALSRDLRRF
DKGGEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGADAHYLGRRLVRMAVEDIGLADPRALEIALNACETYERLGSPE
GELALAEATVFLACAAKSNAVYKAYNAARQFIAKDGSRPVPLHLRNAPTRLMKELGYGQTYRYAHDEPDAYAAGESYLPE
GMAPPGWYQPTPRGLEARIADKLAHLRELDRQAGAREGTAKGERG
>Mature_444_residues
ADLFDSVEPQRVPLAERMRPGTLDEVAGQAHLLGPGKPLRLAFASGKPHSMILWGPPGVGKTTLARLMAKGFDAEFVALS
AVFSGVKDIREAIVQAQAAKARGRHTILFVDEVHRFNKAQQDAFLPYVEQGLVTFIGATTENPSFEVNSALLSRAAVYVL
EPLDTEAMQGLFERARSLACPDLVFEEAARERMIGFADGDARRLMNLIEQIQVAAETAGVAPVTADFVDEALSRDLRRFD
KGGEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGADAHYLGRRLVRMAVEDIGLADPRALEIALNACETYERLGSPEG
ELALAEATVFLACAAKSNAVYKAYNAARQFIAKDGSRPVPLHLRNAPTRLMKELGYGQTYRYAHDEPDAYAAGESYLPEG
MAPPGWYQPTPRGLEARIADKLAHLRELDRQAGAREGTAKGERG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=437, Percent_Identity=45.3089244851259, Blast_Score=324, Evalue=1e-88,
Organism=Homo sapiens, GI18426904, Length=435, Percent_Identity=41.3793103448276, Blast_Score=270, Evalue=3e-72,
Organism=Escherichia coli, GI1787119, Length=430, Percent_Identity=53.7209302325581, Blast_Score=437, Evalue=1e-124,
Organism=Escherichia coli, GI1786676, Length=229, Percent_Identity=30.1310043668122, Blast_Score=76, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6324111, Length=425, Percent_Identity=37.8823529411765, Blast_Score=281, Evalue=2e-76,
Organism=Saccharomyces cerevisiae, GI6324039, Length=231, Percent_Identity=25.5411255411255, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48542; Mature: 48411

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLFDSVEPQRVPLAERMRPGTLDEVAGQAHLLGPGKPLRLAFASGKPHSMILWGPPGV
CCCCHHCCCCCCCCHHHHCCCCCHHHHCCCEEEECCCCCEEEEEECCCCCEEEEECCCCC
GKTTLARLMAKGFDAEFVALSAVFSGVKDIREAIVQAQAAKARGRHTILFVDEVHRFNKA
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHH
QQDAFLPYVEQGLVTFIGATTENPSFEVNSALLSRAAVYVLEPLDTEAMQGLFERARSLA
HHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCC
CPDLVFEEAARERMIGFADGDARRLMNLIEQIQVAAETAGVAPVTADFVDEALSRDLRRF
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
DKGGEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGADAHYLGRRLVRMAVEDIGLADP
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
RALEIALNACETYERLGSPEGELALAEATVFLACAAKSNAVYKAYNAARQFIAKDGSRPV
HHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCC
PLHLRNAPTRLMKELGYGQTYRYAHDEPDAYAAGESYLPEGMAPPGWYQPTPRGLEARIA
CEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
DKLAHLRELDRQAGAREGTAKGERG
HHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ADLFDSVEPQRVPLAERMRPGTLDEVAGQAHLLGPGKPLRLAFASGKPHSMILWGPPGV
CCCHHCCCCCCCCHHHHCCCCCHHHHCCCEEEECCCCCEEEEEECCCCCEEEEECCCCC
GKTTLARLMAKGFDAEFVALSAVFSGVKDIREAIVQAQAAKARGRHTILFVDEVHRFNKA
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHH
QQDAFLPYVEQGLVTFIGATTENPSFEVNSALLSRAAVYVLEPLDTEAMQGLFERARSLA
HHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCC
CPDLVFEEAARERMIGFADGDARRLMNLIEQIQVAAETAGVAPVTADFVDEALSRDLRRF
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
DKGGEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGADAHYLGRRLVRMAVEDIGLADP
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
RALEIALNACETYERLGSPEGELALAEATVFLACAAKSNAVYKAYNAARQFIAKDGSRPV
HHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCC
PLHLRNAPTRLMKELGYGQTYRYAHDEPDAYAAGESYLPEGMAPPGWYQPTPRGLEARIA
CEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
DKLAHLRELDRQAGAREGTAKGERG
HHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]