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The map label for this gene is ykgD [C]

Identifier: 119897611

GI number: 119897611

Start: 1437635

End: 1438639

Strand: Direct

Name: ykgD [C]

Synonym: azo1320

Alternate gene names: 119897611

Gene position: 1437635-1438639 (Clockwise)

Preceding gene: 119897608

Following gene: 119897612

Centisome position: 32.85

GC content: 71.54

Gene sequence:

>1005_bases
ATGAGCAAAGACACCTTGTCCGATCTGCTGCGCGCGGTACGGCTGCGCGGCGCGGTCTTCTACTACGTCAGCAACCGCGC
GCAATGGGCGGCCGAGGCGCCGCCCGCGCGCGACATCGCGGCGGCCGTGATGCCGGGCGCCGAACACGTCATGGAATTCC
ACCTGATGGCGCGCGGCTGCGGCTGGGCCGCGGTGGATGGCCTGGCGCCGGTGCGGCTCGCGCCCGGTGACATCGTTGTC
CTGCCGCACGGCGACGCCCATGTGATGTCCAGCGCGCCCGGCATCGCACCGCAGCGCATCTCCGCGGAATGGGTGTTCGC
CACCCGCCAGGTGCCCAAGCCGATGCCGGTGGCCTTTCACCACGGCGTGCACGAACCCGGCGCCACCGGCCCGGTGGATG
GAGCGGAAAGCGTGCTGGTGTGCGGCTTCCTCGGCTGCGACCTGAAACCCTTCAACCCGCTGGTGGCAGCCTTGCCGCGC
CTGCTGCACCTGCCCGCGGCGCGCGCCGGCGAATGGGTGGCGCACGTCATCGACCAAGCCGCGCGCGAATCCACCGAACA
GCGCCCCGGCGCCGATGCGGTGCTCGAACGACTGGCGGAGATGATGTTCGTCGACACCGCGCGGCGCTACCTCGACAGTC
TGCCCGACGACGCCACCGGCTGGCTGGCCGGCCTGCGCGACCGCTACGTCGGCCGCGCGCTGGCCCTGCTGCACGAACGG
CCGGAGCAGGCATGGACCATGGACGACCTTGGCCGCGAGGTCGGCCTGTCGCGCTCCGCGCTGCACGAACGCTTCCTGCA
ATACGTCGGCCAGCCGCCCATGCACTACCTCGCCAACTGGCGCATCCAGCTCGGCGCGCGCCTGCTCCGCGAAACCAACC
GCACGGTTGCATCCATTGCCGTCGAGGTCGGATACGAATCCGAGGCTGCCTTCTCGCGCGCCTTCAAGCGGCTGGTGGGG
CAACCGCCCGCGGCCTGGCGCCGCACCGCGCTGACCGCCGCCTGA

Upstream 100 bases:

>100_bases
TTCTTCCGTCCGGCCCGGTTCGATGCTTGACTGAGAGTCGGGAGGACTTGCCCGAGCGTCCGGAATTGCAGTCGGACGGC
CGGGCGAGGGGAGCACGGCG

Downstream 100 bases:

>100_bases
TCGCGAAAGCTGGCGGGCGGGTAATGCCGACGTCCGCACCGCGCGACCATTCCGCGTCGTGACACAGGTCACGTGGGTGT
CGCCTACATCCAAAGGTAAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSKDTLSDLLRAVRLRGAVFYYVSNRAQWAAEAPPARDIAAAVMPGAEHVMEFHLMARGCGWAAVDGLAPVRLAPGDIVV
LPHGDAHVMSSAPGIAPQRISAEWVFATRQVPKPMPVAFHHGVHEPGATGPVDGAESVLVCGFLGCDLKPFNPLVAALPR
LLHLPAARAGEWVAHVIDQAARESTEQRPGADAVLERLAEMMFVDTARRYLDSLPDDATGWLAGLRDRYVGRALALLHER
PEQAWTMDDLGREVGLSRSALHERFLQYVGQPPMHYLANWRIQLGARLLRETNRTVASIAVEVGYESEAAFSRAFKRLVG
QPPAAWRRTALTAA

Sequences:

>Translated_334_residues
MSKDTLSDLLRAVRLRGAVFYYVSNRAQWAAEAPPARDIAAAVMPGAEHVMEFHLMARGCGWAAVDGLAPVRLAPGDIVV
LPHGDAHVMSSAPGIAPQRISAEWVFATRQVPKPMPVAFHHGVHEPGATGPVDGAESVLVCGFLGCDLKPFNPLVAALPR
LLHLPAARAGEWVAHVIDQAARESTEQRPGADAVLERLAEMMFVDTARRYLDSLPDDATGWLAGLRDRYVGRALALLHER
PEQAWTMDDLGREVGLSRSALHERFLQYVGQPPMHYLANWRIQLGARLLRETNRTVASIAVEVGYESEAAFSRAFKRLVG
QPPAAWRRTALTAA
>Mature_333_residues
SKDTLSDLLRAVRLRGAVFYYVSNRAQWAAEAPPARDIAAAVMPGAEHVMEFHLMARGCGWAAVDGLAPVRLAPGDIVVL
PHGDAHVMSSAPGIAPQRISAEWVFATRQVPKPMPVAFHHGVHEPGATGPVDGAESVLVCGFLGCDLKPFNPLVAALPRL
LHLPAARAGEWVAHVIDQAARESTEQRPGADAVLERLAEMMFVDTARRYLDSLPDDATGWLAGLRDRYVGRALALLHERP
EQAWTMDDLGREVGLSRSALHERFLQYVGQPPMHYLANWRIQLGARLLRETNRTVASIAVEVGYESEAAFSRAFKRLVGQ
PPAAWRRTALTAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=285, Percent_Identity=23.859649122807, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36445; Mature: 36314

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDTLSDLLRAVRLRGAVFYYVSNRAQWAAEAPPARDIAAAVMPGAEHVMEFHLMARGC
CCHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
GWAAVDGLAPVRLAPGDIVVLPHGDAHVMSSAPGIAPQRISAEWVFATRQVPKPMPVAFH
CHHHHCCCCCEEECCCCEEEEECCCHHHHCCCCCCCCHHCCHHHEEHHHCCCCCCCHHHH
HGVHEPGATGPVDGAESVLVCGFLGCDLKPFNPLVAALPRLLHLPAARAGEWVAHVIDQA
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ARESTEQRPGADAVLERLAEMMFVDTARRYLDSLPDDATGWLAGLRDRYVGRALALLHER
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
PEQAWTMDDLGREVGLSRSALHERFLQYVGQPPMHYLANWRIQLGARLLRETNRTVASIA
CHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
VEVGYESEAAFSRAFKRLVGQPPAAWRRTALTAA
HHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
SKDTLSDLLRAVRLRGAVFYYVSNRAQWAAEAPPARDIAAAVMPGAEHVMEFHLMARGC
CHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
GWAAVDGLAPVRLAPGDIVVLPHGDAHVMSSAPGIAPQRISAEWVFATRQVPKPMPVAFH
CHHHHCCCCCEEECCCCEEEEECCCHHHHCCCCCCCCHHCCHHHEEHHHCCCCCCCHHHH
HGVHEPGATGPVDGAESVLVCGFLGCDLKPFNPLVAALPRLLHLPAARAGEWVAHVIDQA
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ARESTEQRPGADAVLERLAEMMFVDTARRYLDSLPDDATGWLAGLRDRYVGRALALLHER
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
PEQAWTMDDLGREVGLSRSALHERFLQYVGQPPMHYLANWRIQLGARLLRETNRTVASIA
CHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
VEVGYESEAAFSRAFKRLVGQPPAAWRRTALTAA
HHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]