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The map label for this gene is cspE [H]

Identifier: 119897425

GI number: 119897425

Start: 1223446

End: 1223649

Strand: Direct

Name: cspE [H]

Synonym: azo1134

Alternate gene names: 119897425

Gene position: 1223446-1223649 (Clockwise)

Preceding gene: 119897420

Following gene: 119897429

Centisome position: 27.96

GC content: 53.92

Gene sequence:

>204_bases
ATGGCAACTGGCACTGTTAAGTGGTTCAACGACTCCAAGGGTTTTGGTTTCATTACCCCTGACGATGGCAGCGAAGACCT
GTTCGCGCACTTCTCGGCCATCAACATGAACGGCTTCAAGACCCTGAAGGAAGGCGAAAAGGTTTCCTTCGAGGTCACTC
AGGGGCCGAAGGGTAAGCAGGCTTCGAACATCCAGCGAGCCTGA

Upstream 100 bases:

>100_bases
GTCTGAGCCCGCAGTGCTGGTTATGCTTGACTTGACAACGAGGCATCTGCCGACGGGGATCGTCGGTTTGTATCAAGTAA
CTTTGAAGGATTAGAGCAAT

Downstream 100 bases:

>100_bases
TTGCCGGACACCAGGGAGGCGCGACCCGAAGGGAATGGCCTGAAGGTCGGTCTCTAGGTAAAGCAAAAGGCCGCCGGGAA
TCCCGGCGGCCTTTTGCTTT

Product: cold-shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGPKGKQASNIQRA

Sequences:

>Translated_67_residues
MATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGPKGKQASNIQRA
>Mature_66_residues
ATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGPKGKQASNIQRA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=68.8524590163934, Blast_Score=95, Evalue=9e-22,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=62.5, Blast_Score=92, Evalue=7e-21,
Organism=Escherichia coli, GI1788126, Length=61, Percent_Identity=67.2131147540984, Blast_Score=87, Evalue=1e-19,
Organism=Escherichia coli, GI1789979, Length=62, Percent_Identity=64.5161290322581, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=61.2903225806452, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=61.2903225806452, Blast_Score=82, Evalue=8e-18,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=58.0645161290323, Blast_Score=80, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71983225, Length=56, Percent_Identity=51.7857142857143, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71983217, Length=56, Percent_Identity=51.7857142857143, Blast_Score=66, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=45.9016393442623, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7315; Mature: 7184

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGPKGKQ
CCCCCEEEECCCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
ASNIQRA
CCCCCCC
>Mature Secondary Structure 
ATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMNGFKTLKEGEKVSFEVTQGPKGKQ
CCCCEEEECCCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
ASNIQRA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA