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The map label for this gene is glcD2 [H]

Identifier: 119897318

GI number: 119897318

Start: 1103397

End: 1104803

Strand: Direct

Name: glcD2 [H]

Synonym: azo1027

Alternate gene names: 119897318

Gene position: 1103397-1104803 (Clockwise)

Preceding gene: 119897317

Following gene: 119897319

Centisome position: 25.21

GC content: 64.75

Gene sequence:

>1407_bases
ATGGACAGGATCGTAGAGGAACTGATCGGTATCGTCGGCGAGGCGAACGTCCTTACCACAGCCGACGACATGGCCCCTTA
TCTGACCGACTGGCGAGGCCGCTACCGCGGCCATGCGCGCGCGGTGGTCAGGCCGGCTGCAACGGCTGAAGTGAGCGCCG
TTCTGGCGGCGTGCCATGCGGCCGCGGTGCCCGTCGTTCCTCAGGGCGGCAACACGGGCTTGTGTGGCGGGGCAACGCCT
TCGGAGGCGGGAGTGGCGGTCGTGCTCAGCCTGACCAGGATGAACCGCATCCGCTCCCTCGATCCGGACAACAACACCGT
GGGGGTCGAAGCTGGCTGCACCCTTGCTGCGCTCCAGGAAGCCGCGGCGGCAGCGGAGCGGCTGTTCCCCTTGTCGCTGG
CGTCGGAGGGCAGTTGCACCATTGGCGGAAACTTGTCCACCAACGCCGGCGGGGTGCAGGTGCTGCGCTACGGAAATACG
CGCGAACTGACGCTGGGGCTCGAGGTGGTGCTGCCGGACGGGCGGATCTGGGACGGGATGCGAGGCTTGCGCAAGGACAA
CACGGGTTATGACCTCAAGCACCTTTTCATTGGCGCCGAGGGAACCTTGGGTGTGATCACCGCTGCAGTGCTGAAGTTGT
TTCCCGCGCCCCGCGGGTTTGCGACGGCCTGGGCTGCCGTGTCCGACCCTGCTGCAGCGGTCCGTCTGCTTGGACGCCTG
CGCCATCACTGCGGTGACCGAATCAGCGCTTTCGAACTCGTGGGGCGGCCGGCACTCGATCTCGTGCTGAAGCACATCCC
CGGGGCTCGTGATCCCTTCAGTGCGCCCACCCAGTGGGCTGTTCTGATCGAACTGAGCGACAGCCTCGAGGGAGAGGGGC
TGGCCGAGACCCTCGCCGGCGCATTAGGGGCCGAGATGGAGGCGGGGCTGGTCCTCGATGCGGTCGTCGCGTCCAGCCTT
GGGCAGGCCCAGGCGCTGTGGGCGCTGCGTGAAAACATCTCGGAAGCGCAGCGCATCGAAGGCGTGAGCATCAAGCACGA
TGTGTCGGTGCCGGTGAGCCGGATCGCCGAGTTTCTTGAGCGGGCGGATGTCAGCCTCAAATCGCAGTGGCCCGGGGTGC
GCATCGTGGCATTCGGTCACATCGGTGACGGCAATCTGCACTACAACCTTTCACGTAGTGAAACCGACGACAACGCCTCC
TTCATCGCCCGCACCGAGGACGTCAATCGGATCGTCCATGACCTGGTCGATGCCTTGGGCGGTTCGATTTCCGCCGAGCA
CGGCCTGGGACAGCTCAAGAGAGCGGAGATCCGTCGTTACAAGAGTACGGTCGAGATGGACATGATGGAGGCAATCAAGA
ATGCCTTCGATCCGTCGCGCCTGATGAATCCCGGAAAGGTGCTTTGA

Upstream 100 bases:

>100_bases
TTGCGGAGGGGGAGGCCGCAGTGGCCCGGGTTCGCCCCTTGCTTGACTATGCGCTCGGGAGGGCGGGGTCGGCTTAACGG
CGTAGGCGTCAGGAGCGCGA

Downstream 100 bases:

>100_bases
TTCCGCTGCGGCAGCGAAACCGAAAATTCTCGCGTTGCCGTCTTTACAGCGACGTAATGTCACCCTATAATGCGCGCTCT
TTCGACGGGGGTATAGCTCA

Product: putative glycolate oxidase subunit GlcD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MDRIVEELIGIVGEANVLTTADDMAPYLTDWRGRYRGHARAVVRPAATAEVSAVLAACHAAAVPVVPQGGNTGLCGGATP
SEAGVAVVLSLTRMNRIRSLDPDNNTVGVEAGCTLAALQEAAAAAERLFPLSLASEGSCTIGGNLSTNAGGVQVLRYGNT
RELTLGLEVVLPDGRIWDGMRGLRKDNTGYDLKHLFIGAEGTLGVITAAVLKLFPAPRGFATAWAAVSDPAAAVRLLGRL
RHHCGDRISAFELVGRPALDLVLKHIPGARDPFSAPTQWAVLIELSDSLEGEGLAETLAGALGAEMEAGLVLDAVVASSL
GQAQALWALRENISEAQRIEGVSIKHDVSVPVSRIAEFLERADVSLKSQWPGVRIVAFGHIGDGNLHYNLSRSETDDNAS
FIARTEDVNRIVHDLVDALGGSISAEHGLGQLKRAEIRRYKSTVEMDMMEAIKNAFDPSRLMNPGKVL

Sequences:

>Translated_468_residues
MDRIVEELIGIVGEANVLTTADDMAPYLTDWRGRYRGHARAVVRPAATAEVSAVLAACHAAAVPVVPQGGNTGLCGGATP
SEAGVAVVLSLTRMNRIRSLDPDNNTVGVEAGCTLAALQEAAAAAERLFPLSLASEGSCTIGGNLSTNAGGVQVLRYGNT
RELTLGLEVVLPDGRIWDGMRGLRKDNTGYDLKHLFIGAEGTLGVITAAVLKLFPAPRGFATAWAAVSDPAAAVRLLGRL
RHHCGDRISAFELVGRPALDLVLKHIPGARDPFSAPTQWAVLIELSDSLEGEGLAETLAGALGAEMEAGLVLDAVVASSL
GQAQALWALRENISEAQRIEGVSIKHDVSVPVSRIAEFLERADVSLKSQWPGVRIVAFGHIGDGNLHYNLSRSETDDNAS
FIARTEDVNRIVHDLVDALGGSISAEHGLGQLKRAEIRRYKSTVEMDMMEAIKNAFDPSRLMNPGKVL
>Mature_468_residues
MDRIVEELIGIVGEANVLTTADDMAPYLTDWRGRYRGHARAVVRPAATAEVSAVLAACHAAAVPVVPQGGNTGLCGGATP
SEAGVAVVLSLTRMNRIRSLDPDNNTVGVEAGCTLAALQEAAAAAERLFPLSLASEGSCTIGGNLSTNAGGVQVLRYGNT
RELTLGLEVVLPDGRIWDGMRGLRKDNTGYDLKHLFIGAEGTLGVITAAVLKLFPAPRGFATAWAAVSDPAAAVRLLGRL
RHHCGDRISAFELVGRPALDLVLKHIPGARDPFSAPTQWAVLIELSDSLEGEGLAETLAGALGAEMEAGLVLDAVVASSL
GQAQALWALRENISEAQRIEGVSIKHDVSVPVSRIAEFLERADVSLKSQWPGVRIVAFGHIGDGNLHYNLSRSETDDNAS
FIARTEDVNRIVHDLVDALGGSISAEHGLGQLKRAEIRRYKSTVEMDMMEAIKNAFDPSRLMNPGKVL

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=452, Percent_Identity=37.3893805309735, Blast_Score=276, Evalue=3e-74,
Organism=Homo sapiens, GI37595756, Length=476, Percent_Identity=32.1428571428571, Blast_Score=172, Evalue=5e-43,
Organism=Homo sapiens, GI37595754, Length=499, Percent_Identity=30.8617234468938, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI4501993, Length=462, Percent_Identity=23.8095238095238, Blast_Score=96, Evalue=7e-20,
Organism=Escherichia coli, GI1789351, Length=465, Percent_Identity=32.0430107526882, Blast_Score=169, Evalue=4e-43,
Organism=Escherichia coli, GI1787977, Length=510, Percent_Identity=25.2941176470588, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI48994907, Length=488, Percent_Identity=22.9508196721311, Blast_Score=79, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17534361, Length=453, Percent_Identity=35.0993377483444, Blast_Score=267, Evalue=8e-72,
Organism=Caenorhabditis elegans, GI71992373, Length=497, Percent_Identity=28.3702213279678, Blast_Score=161, Evalue=7e-40,
Organism=Caenorhabditis elegans, GI71992381, Length=497, Percent_Identity=27.364185110664, Blast_Score=149, Evalue=3e-36,
Organism=Caenorhabditis elegans, GI71992392, Length=389, Percent_Identity=29.305912596401, Blast_Score=133, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17556096, Length=178, Percent_Identity=28.0898876404494, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6320023, Length=467, Percent_Identity=36.830835117773, Blast_Score=310, Evalue=4e-85,
Organism=Saccharomyces cerevisiae, GI6320764, Length=455, Percent_Identity=32.967032967033, Blast_Score=273, Evalue=4e-74,
Organism=Saccharomyces cerevisiae, GI6320027, Length=497, Percent_Identity=26.9617706237425, Blast_Score=153, Evalue=4e-38,
Organism=Drosophila melanogaster, GI18921117, Length=468, Percent_Identity=36.5384615384615, Blast_Score=280, Evalue=1e-75,
Organism=Drosophila melanogaster, GI24639277, Length=468, Percent_Identity=36.5384615384615, Blast_Score=280, Evalue=1e-75,
Organism=Drosophila melanogaster, GI24639275, Length=468, Percent_Identity=36.5384615384615, Blast_Score=280, Evalue=1e-75,
Organism=Drosophila melanogaster, GI24653753, Length=189, Percent_Identity=31.2169312169312, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 49518; Mature: 49518

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIVEELIGIVGEANVLTTADDMAPYLTDWRGRYRGHARAVVRPAATAEVSAVLAACHA
CHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHHHHHHHHHH
AAVPVVPQGGNTGLCGGATPSEAGVAVVLSLTRMNRIRSLDPDNNTVGVEAGCTLAALQE
HCCCEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHH
AAAAAERLFPLSLASEGSCTIGGNLSTNAGGVQVLRYGNTRELTLGLEVVLPDGRIWDGM
HHHHHHHHCCEEECCCCCEEECCCCCCCCCCEEEEEECCCEEEEEEEEEEECCCCHHHHH
RGLRKDNTGYDLKHLFIGAEGTLGVITAAVLKLFPAPRGFATAWAAVSDPAAAVRLLGRL
HHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHH
RHHCGDRISAFELVGRPALDLVLKHIPGARDPFSAPTQWAVLIELSDSLEGEGLAETLAG
HHHHCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHH
ALGAEMEAGLVLDAVVASSLGQAQALWALRENISEAQRIEGVSIKHDVSVPVSRIAEFLE
HHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHH
RADVSLKSQWPGVRIVAFGHIGDGNLHYNLSRSETDDNASFIARTEDVNRIVHDLVDALG
HCCCCHHCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHC
GSISAEHGLGQLKRAEIRRYKSTVEMDMMEAIKNAFDPSRLMNPGKVL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
>Mature Secondary Structure
MDRIVEELIGIVGEANVLTTADDMAPYLTDWRGRYRGHARAVVRPAATAEVSAVLAACHA
CHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHHHHHHHHHH
AAVPVVPQGGNTGLCGGATPSEAGVAVVLSLTRMNRIRSLDPDNNTVGVEAGCTLAALQE
HCCCEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHH
AAAAAERLFPLSLASEGSCTIGGNLSTNAGGVQVLRYGNTRELTLGLEVVLPDGRIWDGM
HHHHHHHHCCEEECCCCCEEECCCCCCCCCCEEEEEECCCEEEEEEEEEEECCCCHHHHH
RGLRKDNTGYDLKHLFIGAEGTLGVITAAVLKLFPAPRGFATAWAAVSDPAAAVRLLGRL
HHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHH
RHHCGDRISAFELVGRPALDLVLKHIPGARDPFSAPTQWAVLIELSDSLEGEGLAETLAG
HHHHCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHH
ALGAEMEAGLVLDAVVASSLGQAQALWALRENISEAQRIEGVSIKHDVSVPVSRIAEFLE
HHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHH
RADVSLKSQWPGVRIVAFGHIGDGNLHYNLSRSETDDNASFIARTEDVNRIVHDLVDALG
HCCCCHHCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHC
GSISAEHGLGQLKRAEIRRYKSTVEMDMMEAIKNAFDPSRLMNPGKVL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]