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The map label for this gene is hlyB [H]

Identifier: 119897239

GI number: 119897239

Start: 1019477

End: 1020664

Strand: Direct

Name: hlyB [H]

Synonym: azo0948

Alternate gene names: 119897239

Gene position: 1019477-1020664 (Clockwise)

Preceding gene: 119897238

Following gene: 119897240

Centisome position: 23.3

GC content: 74.07

Gene sequence:

>1188_bases
ATGACGACGATGGCGATGGCGACGGCGGCGCGCGCCCGCGCGGTTCCGTGGCGACCTGCGCGCGGGCTGCTCGGATTGTG
GGGTGCCACGGTGGCCGCAACGAGCGTTCTGTTCCTCGCCGAGGGCATCGCGCTGCAGGCCGTGGGCGCACTCGGCATGC
TGGCCGCACTGGTGGCGGCGCTGCGCGCGGGGGGGCGGTTCGAGCGCCGGCTCGCGGAGCTGGATGCCTTTGCCGCGGCC
TGCGCCGGCGGCCACTTCACCGCCCGGCTCACCACGCCGGCCGATGACGCGCTGACGCCGCTCGCCGAGCACCTCAACGC
CGCCGCGCGTTGCATTGCCCAGGTGCTGGCCGAACTGGATGGCGCCGGTGCCGAACTGCGCAACGTCTCGCGCGAAACGC
TGGCCGATGTGGCGGCCGGCGAGGCTGGCGTGCGCAGCCAGCGCGACATCACGGTGTCGTCCGCGGCGACGCTGGAACAG
TTGATCACCAGTCTGGCCGCCACCCGCGATGCGGCGGCCGACGCCGCGCAGGCGGCTGAAGGCGCTGCGCGCGAGGCGGC
ACGCGGCGAAGCGGAGGCGGGCGCCGTTGCCGCCGCGATGGGGGCGGTGGCTGCCGACGTGGATGCCGCTGCGGACGTGG
CCACAGCCCTGGCGGAGCGTTCGCGCCGGATCGAGGGTATCGCGGCGACCATAGGCGGCATCGCCGCACGCACCAACCTG
CTCGCGCTCAATGCCGCGATCGAGGCGGCGCGGGCGGGCGAGGCGGGGCGCGGCTTCGCCGTGGTGGCGGACGAAGTGCG
CCAGCTTGCCGACGGCAGCGCTGCGGCGACCGCCGAGATCGGCAGTCTGATCCAGGAGGTGTTGGCCGAGGTCGACCGGC
TGGCGCGTGTGATCGGCGACACCCGCCGCAGTGCCGGCGACAGCTGCGCGCGGGCGCAGGCCGCCGCAAGCTTGCTCGCG
ACCATCCGCGACGCCGCCGGCCAGACGCAGCTGCGCATCCGCGAGATCGCCGAGGCGAGCGCCGAGCAGAGCATCGCCGG
CGAGCGGATTGCGGGGGATGTGGAACAGGTCGCGCGGCTGGCTGACGACAACGCGCTCCGAATCGGCGAAAGTGGTGAAC
TCGCGCGCTACCAGGACGAACTGGTGGGCCGGCTCGAAGAGCGGCTGGGCGCGTACCGCTACGAATAG

Upstream 100 bases:

>100_bases
GTCTGCCCGCGCTGCGGCGCATGGTGGCGGAAGGGGCTGTCGCGGAGGTCGCTGGCGCGTGAAACCGGCGGGTACGCCCG
CCACACCACAGGAGCAAGGG

Downstream 100 bases:

>100_bases
TCGCGGCGCGCTCGATCGGCCGCGCCGGGGCCGGGCGGCGGTGGAAACAGGATCAGCAACGGGACGCAGCAATGATGGAA
TGGCAAATGGGCATGGCCGC

Product: putative methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MTTMAMATAARARAVPWRPARGLLGLWGATVAATSVLFLAEGIALQAVGALGMLAALVAALRAGGRFERRLAELDAFAAA
CAGGHFTARLTTPADDALTPLAEHLNAAARCIAQVLAELDGAGAELRNVSRETLADVAAGEAGVRSQRDITVSSAATLEQ
LITSLAATRDAAADAAQAAEGAAREAARGEAEAGAVAAAMGAVAADVDAAADVATALAERSRRIEGIAATIGGIAARTNL
LALNAAIEAARAGEAGRGFAVVADEVRQLADGSAAATAEIGSLIQEVLAEVDRLARVIGDTRRSAGDSCARAQAAASLLA
TIRDAAGQTQLRIREIAEASAEQSIAGERIAGDVEQVARLADDNALRIGESGELARYQDELVGRLEERLGAYRYE

Sequences:

>Translated_395_residues
MTTMAMATAARARAVPWRPARGLLGLWGATVAATSVLFLAEGIALQAVGALGMLAALVAALRAGGRFERRLAELDAFAAA
CAGGHFTARLTTPADDALTPLAEHLNAAARCIAQVLAELDGAGAELRNVSRETLADVAAGEAGVRSQRDITVSSAATLEQ
LITSLAATRDAAADAAQAAEGAAREAARGEAEAGAVAAAMGAVAADVDAAADVATALAERSRRIEGIAATIGGIAARTNL
LALNAAIEAARAGEAGRGFAVVADEVRQLADGSAAATAEIGSLIQEVLAEVDRLARVIGDTRRSAGDSCARAQAAASLLA
TIRDAAGQTQLRIREIAEASAEQSIAGERIAGDVEQVARLADDNALRIGESGELARYQDELVGRLEERLGAYRYE
>Mature_394_residues
TTMAMATAARARAVPWRPARGLLGLWGATVAATSVLFLAEGIALQAVGALGMLAALVAALRAGGRFERRLAELDAFAAAC
AGGHFTARLTTPADDALTPLAEHLNAAARCIAQVLAELDGAGAELRNVSRETLADVAAGEAGVRSQRDITVSSAATLEQL
ITSLAATRDAAADAAQAAEGAAREAARGEAEAGAVAAAMGAVAADVDAAADVATALAERSRRIEGIAATIGGIAARTNLL
ALNAAIEAARAGEAGRGFAVVADEVRQLADGSAAATAEIGSLIQEVLAEVDRLARVIGDTRRSAGDSCARAQAAASLLAT
IRDAAGQTQLRIREIAEASAEQSIAGERIAGDVEQVARLADDNALRIGESGELARYQDELVGRLEERLGAYRYE

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=302, Percent_Identity=32.7814569536424, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787690, Length=240, Percent_Identity=35.4166666666667, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1788194, Length=278, Percent_Identity=33.0935251798561, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI2367378, Length=212, Percent_Identity=38.2075471698113, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1789453, Length=300, Percent_Identity=29, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 40137; Mature: 40006

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTMAMATAARARAVPWRPARGLLGLWGATVAATSVLFLAEGIALQAVGALGMLAALVAA
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRAGGRFERRLAELDAFAAACAGGHFTARLTTPADDALTPLAEHLNAAARCIAQVLAELD
HHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GAGAELRNVSRETLADVAAGEAGVRSQRDITVSSAATLEQLITSLAATRDAAADAAQAAE
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAAREAARGEAEAGAVAAAMGAVAADVDAAADVATALAERSRRIEGIAATIGGIAARTNL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALNAAIEAARAGEAGRGFAVVADEVRQLADGSAAATAEIGSLIQEVLAEVDRLARVIGD
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRRSAGDSCARAQAAASLLATIRDAAGQTQLRIREIAEASAEQSIAGERIAGDVEQVARL
HHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
ADDNALRIGESGELARYQDELVGRLEERLGAYRYE
HCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTMAMATAARARAVPWRPARGLLGLWGATVAATSVLFLAEGIALQAVGALGMLAALVAA
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRAGGRFERRLAELDAFAAACAGGHFTARLTTPADDALTPLAEHLNAAARCIAQVLAELD
HHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
GAGAELRNVSRETLADVAAGEAGVRSQRDITVSSAATLEQLITSLAATRDAAADAAQAAE
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAAREAARGEAEAGAVAAAMGAVAADVDAAADVATALAERSRRIEGIAATIGGIAARTNL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALNAAIEAARAGEAGRGFAVVADEVRQLADGSAAATAEIGSLIQEVLAEVDRLARVIGD
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRRSAGDSCARAQAAASLLATIRDAAGQTQLRIREIAEASAEQSIAGERIAGDVEQVARL
HHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
ADDNALRIGESGELARYQDELVGRLEERLGAYRYE
HCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]