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The map label for this gene is ycdC [C]

Identifier: 119897136

GI number: 119897136

Start: 908009

End: 908686

Strand: Direct

Name: ycdC [C]

Synonym: azo0845

Alternate gene names: 119897136

Gene position: 908009-908686 (Clockwise)

Preceding gene: 119897135

Following gene: 119897137

Centisome position: 20.75

GC content: 68.88

Gene sequence:

>678_bases
ATGAAGGTAAAGGACGGGCAGGTGGGGAGCGGCGGCGCGCAGCGGCCGCGGGTGCGTCGCAAGGAGGCCCGGCCGCAGGA
ATTGCTTGCCGCCGCCCTGGCGCTGTTTGTCGAGAAGGGGTACGCCGCCACGCGTCTGGAGGAGGTCGCCGCGCGCGCGG
GGGTGTCCAAGGGCACGCTCTATCTGTACTTCGACAGCAAGGAAGCGCTGTTCAAGGCAGTCATCCGTGAAGGCGTGGTG
CCCGCGATCGACGCGGGCGAAGCGATGCTGGGAACCTTCGCCGACGACCCGGTTGCGCTGCTGCGCGCCTTCCTGCATGC
GTGGTGGGAGCGTATCGGCAGCACCGAGCTGGGCGGCCTGCCCAAGCTCATGATGTCCGAGGCGGGCAATTTCCCGGACG
TGGCGGCCTACTACAACGAAGCGGTCATCCAGCGCGGGCTCGGGCTGCTGCGCACCGCGGTCAGGCGCGGCATCGATGCC
GGCGTCTTCCGCGCGGTCGATCTCGATCTGGTCGGCACGCTGCTGATCGCGCCGCTGGTGCACCTGTCGATGTGGCGCCA
TTCCTTCGCCACCTGCTGCGCCACCGACATCGAACCGCGCGCCTATGTCGACGCGCATATCGACCTGGTCCTCCACGGGC
TGCGCAACGACCCCGTGCCCGCCGGAGTTGCCCGATGA

Upstream 100 bases:

>100_bases
ACCTGGGCGCATCGGTAGCAAAAAAACTGCTTGAAATCGCCCCGTCTTCCTTCTTTAATGACTGACTGGTTAGTAATTAA
GTCGAAATGGATAGGTCGGC

Downstream 100 bases:

>100_bases
ACCCGCGCTCCGTTCTGGCGCCGCTCGCCGCGTTGCTGCTGGTGGCCTGCTCCGAGGCGCCGCCCCCGCCGGCCGCGCCG
CGTGTGGTGCTGGTGCAGCG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator Tetr Family; Transcription Regulator TetR Family; Transcriptional Regulator Protein Tetr/Acrr-Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulatory Protein; Regulatory Protein Tetr; TetR-Family Transcriptional Regulator; TetR Family Transcription Regulator Protein; Transcriptional Regulator Protein; TetR Family Regulatory Protein; TRANSCRIPTIONal REGULATOR PROTEIN TetR/AcrR-Family

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MKVKDGQVGSGGAQRPRVRRKEARPQELLAAALALFVEKGYAATRLEEVAARAGVSKGTLYLYFDSKEALFKAVIREGVV
PAIDAGEAMLGTFADDPVALLRAFLHAWWERIGSTELGGLPKLMMSEAGNFPDVAAYYNEAVIQRGLGLLRTAVRRGIDA
GVFRAVDLDLVGTLLIAPLVHLSMWRHSFATCCATDIEPRAYVDAHIDLVLHGLRNDPVPAGVAR

Sequences:

>Translated_225_residues
MKVKDGQVGSGGAQRPRVRRKEARPQELLAAALALFVEKGYAATRLEEVAARAGVSKGTLYLYFDSKEALFKAVIREGVV
PAIDAGEAMLGTFADDPVALLRAFLHAWWERIGSTELGGLPKLMMSEAGNFPDVAAYYNEAVIQRGLGLLRTAVRRGIDA
GVFRAVDLDLVGTLLIAPLVHLSMWRHSFATCCATDIEPRAYVDAHIDLVLHGLRNDPVPAGVAR
>Mature_225_residues
MKVKDGQVGSGGAQRPRVRRKEARPQELLAAALALFVEKGYAATRLEEVAARAGVSKGTLYLYFDSKEALFKAVIREGVV
PAIDAGEAMLGTFADDPVALLRAFLHAWWERIGSTELGGLPKLMMSEAGNFPDVAAYYNEAVIQRGLGLLRTAVRRGIDA
GVFRAVDLDLVGTLLIAPLVHLSMWRHSFATCCATDIEPRAYVDAHIDLVLHGLRNDPVPAGVAR

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24350; Mature: 24350

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKDGQVGSGGAQRPRVRRKEARPQELLAAALALFVEKGYAATRLEEVAARAGVSKGTL
CCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEE
YLYFDSKEALFKAVIREGVVPAIDAGEAMLGTFADDPVALLRAFLHAWWERIGSTELGGL
EEEECCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
PKLMMSEAGNFPDVAAYYNEAVIQRGLGLLRTAVRRGIDAGVFRAVDLDLVGTLLIAPLV
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
HLSMWRHSFATCCATDIEPRAYVDAHIDLVLHGLRNDPVPAGVAR
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKVKDGQVGSGGAQRPRVRRKEARPQELLAAALALFVEKGYAATRLEEVAARAGVSKGTL
CCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEE
YLYFDSKEALFKAVIREGVVPAIDAGEAMLGTFADDPVALLRAFLHAWWERIGSTELGGL
EEEECCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
PKLMMSEAGNFPDVAAYYNEAVIQRGLGLLRTAVRRGIDAGVFRAVDLDLVGTLLIAPLV
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
HLSMWRHSFATCCATDIEPRAYVDAHIDLVLHGLRNDPVPAGVAR
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA