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The map label for this gene is mdcY [H]

Identifier: 119896975

GI number: 119896975

Start: 721389

End: 722060

Strand: Reverse

Name: mdcY [H]

Synonym: azo0684

Alternate gene names: 119896975

Gene position: 722060-721389 (Counterclockwise)

Preceding gene: 119896983

Following gene: 119896971

Centisome position: 16.5

GC content: 68.01

Gene sequence:

>672_bases
ATGACAGCGTCCCGCATCGCCCCGCTCGCGCTTTATCAGGAAGTCGCAGAACGCCTGCGCGAGCGCATCTTCTCGCACGA
ACTGCCGCCGGGCACCTGGGTGGACGAGCAGGCACTGGCCGAGCAATACGGCATCTCGCGCACGCCGCTGCGCGAAGCGC
TGAAGGTGCTGGCCTCCGAAGGCCTGGTCACGCTCAAGCCGCGCCGTGGCTGCTACGTCACCGAGATTTCCGAGCGCGAC
CTCGACGAGGTCTTCAACATCATTGCCCTGCTGGAAGGCGAATGCGCCCGCGCCTCGGTGGCGCGCGCCAGCGACGCCGA
CCTTGCCCGCCTGCGCGACATCCACGCCACACTGGAAGCCGCCGCCGCCGCGCAGGATATCGACCGCTTCTTCGAGGCCA
ACCAGGCTTTCCATCACGTGCTGCAGCAGATCGCCGACAACCGCTGGCTGCTGCAGGTGATCGAGGACCTGCGCAAGGTG
ATCAAGCTGTCGCGCCACCATTCGCTGTTTTCCGAAGGCCGCCTGGAGCAGTCGCTCGCCGAACACCGAGAGATCCTGGA
AGCGGTGCTGGCGCGCGATCCGGACGCGGCGGAAACCCGGATGCGCCGCCACATCCACAGCGGCCGCGCGGCGCTGTCTC
GAATCGCGGAGGCGCGCAACCGCGCCGCGTAG

Upstream 100 bases:

>100_bases
TTGGAAATAATACTTTATCCATAATTATGCATGCAACCGTCGGAGACCCATACGACGCCCGCTCCGGGTATCCTTGCGCG
CCTCCGCCCACCACACCGCC

Downstream 100 bases:

>100_bases
TTTTTCTGCCCCCGCCCGCTGCGCGGTCGCCCCCCGAGGGGGCACGCGATCGCCTTGGGACGGCCCGGCGGCGATCGCGG
TTTTCTGCCCCCGCCCGCTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTASRIAPLALYQEVAERLRERIFSHELPPGTWVDEQALAEQYGISRTPLREALKVLASEGLVTLKPRRGCYVTEISERD
LDEVFNIIALLEGECARASVARASDADLARLRDIHATLEAAAAAQDIDRFFEANQAFHHVLQQIADNRWLLQVIEDLRKV
IKLSRHHSLFSEGRLEQSLAEHREILEAVLARDPDAAETRMRRHIHSGRAALSRIAEARNRAA

Sequences:

>Translated_223_residues
MTASRIAPLALYQEVAERLRERIFSHELPPGTWVDEQALAEQYGISRTPLREALKVLASEGLVTLKPRRGCYVTEISERD
LDEVFNIIALLEGECARASVARASDADLARLRDIHATLEAAAAAQDIDRFFEANQAFHHVLQQIADNRWLLQVIEDLRKV
IKLSRHHSLFSEGRLEQSLAEHREILEAVLARDPDAAETRMRRHIHSGRAALSRIAEARNRAA
>Mature_222_residues
TASRIAPLALYQEVAERLRERIFSHELPPGTWVDEQALAEQYGISRTPLREALKVLASEGLVTLKPRRGCYVTEISERDL
DEVFNIIALLEGECARASVARASDADLARLRDIHATLEAAAAAQDIDRFFEANQAFHHVLQQIADNRWLLQVIEDLRKVI
KLSRHHSLFSEGRLEQSLAEHREILEAVLARDPDAAETRMRRHIHSGRAALSRIAEARNRAA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=194, Percent_Identity=30.4123711340206, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI87082149, Length=197, Percent_Identity=30.4568527918782, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081914, Length=197, Percent_Identity=25.8883248730964, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25196; Mature: 25065

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASRIAPLALYQEVAERLRERIFSHELPPGTWVDEQALAEQYGISRTPLREALKVLASE
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHC
GLVTLKPRRGCYVTEISERDLDEVFNIIALLEGECARASVARASDADLARLRDIHATLEA
CCEEECCCCCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
AAAAQDIDRFFEANQAFHHVLQQIADNRWLLQVIEDLRKVIKLSRHHSLFSEGRLEQSLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHREILEAVLARDPDAAETRMRRHIHSGRAALSRIAEARNRAA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TASRIAPLALYQEVAERLRERIFSHELPPGTWVDEQALAEQYGISRTPLREALKVLASE
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHC
GLVTLKPRRGCYVTEISERDLDEVFNIIALLEGECARASVARASDADLARLRDIHATLEA
CCEEECCCCCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
AAAAQDIDRFFEANQAFHHVLQQIADNRWLLQVIEDLRKVIKLSRHHSLFSEGRLEQSLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHREILEAVLARDPDAAETRMRRHIHSGRAALSRIAEARNRAA
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]